GgaINT1024898 @ galGal4
Intron Retention
Gene
ENSGALG00000026431 | SEZ6
Description
seizure related 6 homolog (mouse) [Source:HGNC Symbol;Acc:HGNC:15955]
Coordinates
chr19:5912095-5912356:-
Coord C1 exon
chr19:5912318-5912356
Coord A exon
chr19:5912216-5912317
Coord C2 exon
chr19:5912095-5912215
Length
102 bp
Sequences
Splice sites
5' ss Seq
ACGGTAAGG
5' ss Score
10.38
3' ss Seq
GCCCCCGCTCTCCCGGGCAGCCG
3' ss Score
8.01
Exon sequences
Seq C1 exon
CTTCCTATGATGAGTTTTACAGCAATCGCAATCTGGACG
Seq A exon
GTAAGGGGGCTTCGGGGCACCCTTTGGGCGCTGGGGTGCAACGGGCACCCAGGGTGAAGCCAGCACTGGGTGCCCTCGTTGAGCCCCCGCTCTCCCGGGCAG
Seq C2 exon
CCGTGGCCAAAGCTGTGCCCTCGGAGACGGCACTGGAGGGCACCAATGTGGCCATCGCCATCTTCCTGCCTGTGCTGGTGCTGGCTCTGCTCATCGGAGGCGTTTACCTCTACTTCTCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000026431:ENSGALT00000046159:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGATGAGTTTTACAGCAATCGCA
R:
TTGGAGAAGTAGAGGTAAACGCC
Band lengths:
154-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]