RnoINT0133911 @ rn6
Intron Retention
Gene
ENSRNOG00000009350 | Sez6
Description
seizure related 6 homolog [Source:RGD Symbol;Acc:619780]
Coordinates
chr10:64867169-64867564:-
Coord C1 exon
chr10:64867526-64867564
Coord A exon
chr10:64867287-64867525
Coord C2 exon
chr10:64867169-64867286
Length
239 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
3' ss Seq
AGTCCACCCTTTGCTTTCAGTTG
3' ss Score
7.29
Exon sequences
Seq C1 exon
CTTCTCTGGATGGGTTCTACAACGGCCGTAGCCTGGATG
Seq A exon
GTGAGTCCCCATGCTTGAGAGCCGGATATATGGTTCCCTGGTTCTTACGGCCCCCAGGCCATGGGTTGCCATAAACGAAAGGCAGAGAAAGAGCAGTTGGACCTATCGGGGCATTGAGTTTCTTATCTACCATAGCCAGCTAATGGGAGCTGGTCTCTGAATGTCTTTAAGAAGGGAGGGGACATAGGCTCCAAGGAATGGGGACAACAACTCTAAGCCAGTCCACCCTTTGCTTTCAG
Seq C2 exon
TTGCCAAGGCACCTGCCACCTCCAGTGCCCTGGATGCTGCCCACATGGCAGCTGCCATCTTTCTACCATTGGTGGCCATGGTGTTGCTGGTGGGAGGAGTGTACCTCTATTTCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009350:ENSRNOT00000048543:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGATGGGTTCTACAACGGC
R:
GAGGTACACTCCTCCCACCAG
Band lengths:
141-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]