MmuINT0142269 @ mm10
Intron Retention
Gene
ENSMUSG00000000632 | Sez6
Description
seizure related gene 6 [Source:MGI Symbol;Acc:MGI:104745]
Coordinates
chr11:77977245-77977654:+
Coord C1 exon
chr11:77977245-77977283
Coord A exon
chr11:77977284-77977536
Coord C2 exon
chr11:77977537-77977654
Length
253 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
3' ss Seq
CACCCACCCTTTGCTTTCAGTTG
3' ss Score
8.82
Exon sequences
Seq C1 exon
CCTCTCTGGATGGGTTCTACAACGGCCGTAGCCTGGATG
Seq A exon
GTGAGTCCCCATGCTTGAGAGCGAGATGTATGGTCCCCCCCCCCCCACACCTGGTTCTAGCAGCTCCCAGGTCATGGGTTCCCACAAATGAAAGGCAGAGAAGGAGCAGTTTGGGCCTGTCGGGGCATTAAGCTTCTTGTCTACCATAGGCAGCTAATGGGAGCTGGTCTCCAAATGTCTTTAAGAAGGGAGGGGACATAGGTTCCAAGAAATGGGGATATTAACTCTAACCCCACCCACCCTTTGCTTTCAG
Seq C2 exon
TTGCCAAGGCACCTGCCGCCTCCAGTGCCCTGGACGCTGCTCACCTGGCTGCTGCCATCTTCCTACCATTGGTGGCCATGGTGTTGCTGGTGGGAGGAGTGTACCTCTATTTTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000000632:ENSMUST00000093995:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGATGGGTTCTACAACGGC
R:
GAGGTACACTCCTCCCACCAG
Band lengths:
141-394
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types