DreINT0133581 @ danRer10
Intron Retention
Gene
ENSDARG00000079414 | sez6b
Description
seizure related 6 homolog b [Source:ZFIN;Acc:ZDB-GENE-110628-3]
Coordinates
chr15:24597869-24598111:+
Coord C1 exon
chr15:24597869-24597907
Coord A exon
chr15:24597908-24598002
Coord C2 exon
chr15:24598003-24598111
Length
95 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
3' ss Seq
TGTACTCTGTCCCCATTTAGTGG
3' ss Score
7.95
Exon sequences
Seq C1 exon
CGGTAACACTGGAGTACATTGATGAACGCCGGCTGGATG
Seq A exon
GTAAGAAGCTTTGCATCTTAAAAATACACAAGAATTTGTTATATCATGTATGCAGATGAATTTGTATGTATTTGCTGTACTCTGTCCCCATTTAG
Seq C2 exon
TGGCCAGTGCAGACTTCAGTATGGAGGGGGCCAGTGTGGCTGTGTCCATTTTCATCCCTGTGGCCGTAATCATAATTATCATCTTGTCAATATATTTCTACTTTTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079414:ENSDART00000155502:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF086935=SKG6=WD(100=83.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGTAACACTGGAGTACATTGA
R:
TGATAATTATGATTACGGCCACAGGG
Band lengths:
120-215
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]