BtaINT0131711 @ bosTau6
Intron Retention
Gene
ENSBTAG00000015979 | SEZ6
Description
seizure related 6 homolog (mouse) [Source:HGNC Symbol;Acc:HGNC:15955]
Coordinates
chr19:20880507-20880921:-
Coord C1 exon
chr19:20880883-20880921
Coord A exon
chr19:20880625-20880882
Coord C2 exon
chr19:20880507-20880624
Length
258 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGC
5' ss Score
8.27
3' ss Seq
CCCATCCTCTGTGCTTTCAGTTG
3' ss Score
9.22
Exon sequences
Seq C1 exon
CCTCTCTGGACGGCTTCTACAGCGGCCGCAGCCTGGATG
Seq A exon
GTGAGCCCCCAACCTCCTCAAGGACCAGGGAAATAATCTCCCTGCCCCTTGTTCTCACAGCTTCCAGGCTGTGGGCTCCCCAAGGAGGGAGGGCAGAGAAAGAGAGAGATGTGGGACTACCAGGGGGCAAAAAGCTCCTTCCCCTGCCCCCAGCCAGCTAGAGGGAGCTGGCAGCTGGCTGCCTCTGGGCAGAGGTGAGGGGACATGGGGCTCAGGCGACAGGGCCCTCTGCCCCAGCCCCATCCTCTGTGCTTTCAG
Seq C2 exon
TTGCCAAGGTGCCAGCTGCCTCCAGCACACTGGATGCTGCTCACCTCGCAGCTGCCATCTTCTTGCCGCTGGTAGCGATGGCGCTCTTGGTGGGAGGCGTGTACCTCTACTTCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015979:ENSBTAT00000021257:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCTCTGGACGGCTTCTACA
R:
TGCAGAAGTAGAGGTACACGC
Band lengths:
156-414
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]