GgaINT1026035 @ galGal4
Intron Retention
Gene
ENSGALG00000006039 | SNED1
Description
sushi, nidogen and EGF-like domains 1 [Source:HGNC Symbol;Acc:HGNC:24696]
Coordinates
chr9:4404870-4405493:+
Coord C1 exon
chr9:4404870-4404952
Coord A exon
chr9:4404953-4405406
Coord C2 exon
chr9:4405407-4405493
Length
454 bp
Sequences
Splice sites
5' ss Seq
CACGTAAGT
5' ss Score
10.16
3' ss Seq
TTGACCCTCTCGTTGCCCAGAGC
3' ss Score
6.79
Exon sequences
Seq C1 exon
GTTCACTGAGCTGGTGGATGGCAGAAGGAGGATCAGTGCCAGGTTCGGCACTTTGCCAAGCAAATCCATCACCGTGAAGACAC
Seq A exon
GTAAGTGCTTTGCTGTCTTTCTGGCCCCCTTCTGTCACCGTGTGCCATCTTCTCCAGGATAGGGGGACAGGGAGGCAGGCTGGGCGAGTCATAGGGGAGGGCAGAGCCACCTGCCCACCTCTCCCTGGGCATGCAAACACCTGCCCTACCTAGGGAGGGGGCTGGCCTCTGGCAAGTTGGGAAGCCCAGAGATGGCTTTTGGGTGATGGGAGATGTGGGATGTGGCATGGGCTGGCCTACACTGCCAGCAGTGAATGCTGCCTCGTGCTTGAGGCAAGCGAGCCCCTGGTTTGCTATACCCCAGGTGCCAAAAGTGAAGGGCTAAAGTGCTGCCTCAGGCATGGCCGTCCCCTTGATGCTAGGCTGGGTCCCCCTGCCTGCTGCTGCCGCTGCAGAGGGGCTGCTTTTGGGTCTGGCTCAGCCTGGAAGTCACGTTGACCCTCTCGTTGCCCAG
Seq C2 exon
AGCCAGAGGCTCCCGTGAGGCTGGAGAACAGCGAGGAGCCCAGCCGGAGCAGTCTGGCACTGCAGCTGCGAGAGGCATGGAGCAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006039:ENSGALT00000009725:27
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.379 A=NA C2=0.500
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]