GgaINT1028047 @ galGal4
Intron Retention
Gene
ENSGALG00000021273 | TMPRSS13
Description
transmembrane protease, serine 13 [Source:HGNC Symbol;Acc:HGNC:29808]
Coordinates
chr24:5414102-5414719:-
Coord C1 exon
chr24:5414567-5414719
Coord A exon
chr24:5414126-5414566
Coord C2 exon
chr24:5414102-5414125
Length
441 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
3' ss Seq
GCTGCTGCCCATCCCTGCAGCTG
3' ss Score
9.31
Exon sequences
Seq C1 exon
GGGGACAGCGGGGGGCCCCTGGTGTGCGAGGACAACGGCCGCTGGTACGTGGCTGGTGTGACGAGCTGGGGGACGGGATGTGGCCAGAAGAACAAGCCTGGGGTATACACACGTGTGACGAAACTCCTCGGCTGGATCTACAGCAAAATGGAG
Seq A exon
GTGAGGCTGGGGCACGGAGGGGAGAGGAGTGGGTCCAACCTGGCCCCATGCCTCACTCCTACCCCTGCTATCTACCACTTGCAGAGCGAGAACAACTGAAGCCAGGCTGGAACCTGTGCAGCAGCACCGGCTGGCACCGGCCCCTCGCTCCCCCTGCCACCAGGGCACGGTGTACCGGCTGCTGTCCCCACTCCTCCGGGCTGCCCATGCAATTGGGGATCTGCAGCTGCCTGGATTGTGACAACGCAGCACCTGCAGAGCACCTCTGTCCTGCTGAGGGCGTGGAGACGTCTCTGCCCGGGGCTCAGTCTGTGCTGGATGTGCCCACTTGGAGCTGCTGTCTCAGCTGTGGCCCTTGGCCTGCAAACAGAGGTGCCAGGGCCATGTGTCCTTGAAGGGGGGCGCAGCCGGAAGGTGTGGGGCTGCTGCCCATCCCTGCAG
Seq C2 exon
CTGGAAGCCAGGAGCAGAAAGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000021273:ENSGALT00000011876:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PD(19.7=88.2)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]