BtaINT0150380 @ bosTau6
Intron Retention
Gene
ENSBTAG00000008342 | TMPRSS13
Description
transmembrane protease, serine 13 [Source:HGNC Symbol;Acc:HGNC:29808]
Coordinates
chr15:29000630-29001735:-
Coord C1 exon
chr15:29001583-29001735
Coord A exon
chr15:29000886-29001582
Coord C2 exon
chr15:29000630-29000885
Length
697 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
3' ss Seq
CTCTCTCTTTTCGTCCTCAGAGG
3' ss Score
11.46
Exon sequences
Seq C1 exon
GGAGACAGCGGGGGGCCTCTGGTCTGTGAGCAGAACGGCCGCTGGTACCTGGCAGGAGTCACCAGCTGGGGCACGGGCTGCGGCCAGAGGAACAAACCTGGCGTGTACACCAAGGTGACGGAAGTGCTCCCCTGGATATACAGCAAGATGGAG
Seq A exon
GTGAGAGCCCTGCTGGAGGCGTGTTCCCAGCAGGCGGGGATCCCCCAAGGTGGGGTGCCTGGAAGCAGGCCTGGCCTTTCCCCAGGGTCTTGGCCAGGTCTCCGCACCCCTCTGCTGTTGGGTGTGTTCAGAAGTTGCCAGGATAGGACAGGACAGGTGTCAAATGTTGGCCAACCCCAGCTGCCTGTACTTCTTCCCCTCCTTTTCCTCCTGCAAAACAGAGCTCAGAGGGTTGGAAAGGGGTGGGGACCAAGCTGGGGGCCAGCCCCCAGGATCCCTCTCCTCTCCCCAGCAATGGCCACTTGTGAATCACACACGGAGTTGGGGAGGCCTCCCCTCCCTGGCAGGAGGTTGGTCTCCCAGGAAGCTGGGCAGCGGGAAGGGGAGGTCTACCCCACTTCTGCTGACCCAGTCCAGCTGCTGCCTCCCCTGGACCCCCATCCTTCCTGTAGCTGTGCCGGCCCTTCCCTTCTCCACCCAGGCAGAGAGAACTTGGGTAGGGGTGGGGAAGGTTGCTCTGCAAATCCAGGGTGGCGGGTCTCTCAGAAACCGCTTCCACCTTGTCCCCTTGGCTGCCCCTCTTCTCTGAGGGACAGTGCCCCGTGGCAGCTGGGCTGAATTTTAGGCTCTGAGCCCGCATCCTGTCCTGTGCACACCCAGCCCAGCTTCACTCTGTTCTCTCTCTTTTCGTCCTCAG
Seq C2 exon
AGGGAGATGCGCTTCCGGAAATCGTAAGCAGCTGTCCTGCGTCATCTTACAGAGTCCGCCGTGAAGACTCTGGCCAAAGGGACCGAGCCATTTGCAACCTCCTCTGGGCTAAAGGCCACCAGACACCATCGTTACTGCCACCTCCACTGTCTGCTGCCTCTGTGAATACACACGTGTGTGTATGTTTACATGTGTGTGTCACTGCTCTCCCACGGTCCTCAGAAATCAGGAGAGCTGTCAGCTCTTCCCAAACCCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008342:ENSBTAT00000010989:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PD(19.7=88.2)
A:
NA
C2:
NO


Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGTACCTGGCAGGAGTCA
R:
CCTGATTTCTGAGGACCGTGG
Band lengths:
342-1039
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development