MmuINT0162666 @ mm9
Intron Retention
Gene
ENSMUSG00000037129 | Tmprss13
Description
transmembrane protease, serine 13 [Source:MGI Symbol;Acc:MGI:2682935]
Coordinates
chr9:45153309-45155663:+
Coord C1 exon
chr9:45153309-45153461
Coord A exon
chr9:45153462-45154074
Coord C2 exon
chr9:45154075-45155663
Length
613 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
3' ss Seq
TTTTCTGGTCTCTTCCTCAGAGT
3' ss Score
10.38
Exon sequences
Seq C1 exon
GGAGACAGTGGAGGACCTCTCGTCTGTGAGCAGAACAATCGCTGGTACCTGGCAGGTGTCACCAGCTGGGGCACAGGCTGTGGCCAGAAAAACAAGCCTGGTGTGTACACCAAAGTGACAGAAGTACTTCCCTGGATTTACAGAAAGATGGAG
Seq A exon
GTGAGCGCTCAGCTCAGGGATAGAACCTGGAGGAGGGTGGAGGGTGTTCAGACAAAGACCATCTGAGCTATGTGCATTTGAGGATGTCCAAGACAGGACTAGATGTCAGTCATGGGATCGATCAGTCCAAGGTGTCAGTTTTCCCTCCTTTTGCTCCCTTGGAAAAGAGCTGGCAGTGTTGTAGAAGGGTGAACCTTGGTATGTTGTCAACACCAATATAGTTCTCCTCTCCTAGTGATACCCAAAGGTATCCAAAATGACCACTAGAGTGTGCTAGGAGGTTGCCTTCCATGGCATGAAAGTTGCCCCTCAGGAAATGATGGATCTGCTCTGCTGGCTCAGCTCAGCTCAACCCTGCTTCCTTACTGTTCTCCAGCCTACAACTGTAAAGCCCAGTGCTGAGGCCAACCCTCCCTCTCTCTGTGGGCAAGATGATACAGGAGTCAGAGGGAAACTGCATCAGACCGCCCTGCCATAAGCCTCGGAGTGCACTCCCTCTCTCTCAGAGAAGATGCTAACTAGCATTCAGCTGGACTGTACGGGAAGCCCTGGTCTCTCTAGTCCTTGAGTTTCTGTGTTTCACGCTTACCCTGTTTTCTGGTCTCTTCCTCAG
Seq C2 exon
AGTGAGGTACGATTCCGGAAATCTTAACCATGTCCTCCTCACGTTGCTGACTGCTATGAAGATCCTGGGCACAGGGATGGGCCATTTGCAGCATCTGGACCAGTGACCACCAGGCACCTTTGTTTCTTCCACCTCTGCTGTCTGCTGTCTCTGGGAGAGTGTGTATGTGGTGTGTATGTGTTTGCATCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGGTGTGGTATGTTACTATTATAAATTCTTCAGAAAACAGGAAAACTCAGCTCTTCTCAGAATCCCAGGCTGGAGATCTGGAGTTAAGAGTTTGGGCACCAGGTGTGTTCCTACGAGTCCATAAGTGTGAAGGTGGAGCCAAAAATGAGCCTGGGCAGGACTTGGAACATGACAACAGCAGTTGTCGCTCTTCTGACTCTGACTTGAAGGCCAGCCAGGATTGGTCAGACACCCAACAGCCAGTAACACCATTGCTGTGCTGGGACAGCAGCAAGTTTTGTCAGGGGCTGTCTTGTCGGTGCCCGGACCATCTGTCCTCCGTGGAAAACCTTTACCATCTGTGAGCAAGCATCCGGCCCTCTCTGTCACTTGCAGCTGCTGTGGGCTCCAGAGCTGGGCTCTGCTGTAGCTGCCCATCTCTAGGTAATGACTGTGACTCAGGCTTGCTGTGCCTTTGGTCACAAGCTGTTGGGATGAATTTTATTTTTATATTTAAAATATAGAAATAGATGTAACTTTAAGGCGTCTCCAAAAATCCTAGGGACCTTGGGAGGTTTTTTTTTTTTTTTTTTTTTTTTTTACATGAATTACTTCATGAACTCCAAGGGACCCATGGGAGTTGCAGCATCCTATAATATATTATACCACTGAAGCATCCTGTGATATATTACTGGCTTCATGAAATCAGGTGAAGTGCCTTGATGAAATCCTCAGGACAGACACCTCCAGGTCAGTGGAGAGACTAGGGACCTTTGAAATACTCAGGGAAGAAAACCCTCCTTTGGGTTGACAGAAAAATCCAGTGCATACTGGTCTAGCCTCCAAGGACTATAGCCAGCCAGAAGAAATAAAGATGTGTGTGCTGCCCTGGTTCGCCTCCTGGGACCTCTGAGGAAGTCCACACATACAGCATCGTTTACACCCAAGGGCTGACAATGAAGTCTGCTTCTGTCATCCTTCATCTTTTGACTTTGTACTGACTTAAAAGGCCATGAAGAGAATGCAAGACCTGTCCTCAGAACTTCTAAACAGCCCTTGTGAGTGGCCTCAGTTGGCCATTCTCCTGGTCTTCCCTGGGCCTTTTCTCTTGGTTACCTGTTGTTACTCAGCTCCACTCTCTTCAGCCTTCCTTGGGCCTACCAGACTTCTGTGATACTGAGTCTCGGAGGCAAGTTCAAGGAGATCAGACCAGCTCAGGACAGCTCAGGCAAGCTGGAGGTCACTGGAGTGGTTGGGCAGCATCAGACAGGGCTGAGACACAAGGGAATCTCTTCAAGGCTGGGAAGGAGGCGGGCAGCATCCATGTGTGCAGAAGATCCCAGCAATGAGCTTCCATAATAAAATCGTGTGGCACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000037129-Tmprss13:NM_001013373:12
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PD(19.7=88.2)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGACAGTGGAGGACCTCTC
R:
ACACACACACACACGATGCAA
Band lengths:
355-968
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: