DreINT0165329 @ danRer10
Intron Retention
Gene
ENSDARG00000077573 | tmprss13b
Description
transmembrane protease, serine 13b [Source:ZFIN;Acc:ZDB-GENE-090309-2]
Coordinates
chr5:37287942-37290474:-
Coord C1 exon
chr5:37290319-37290474
Coord A exon
chr5:37288206-37290318
Coord C2 exon
chr5:37287942-37288205
Length
2113 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAC
5' ss Score
7.82
3' ss Seq
TCCTGTCTCTTTAATTACAGCAA
3' ss Score
7.82
Exon sequences
Seq C1 exon
GGTGACAGTGGTGGTCCATTGGCATGTAAATCAAATGATGGTCAATGGTTTCTCACAGGCGTAACAAGTTGGGGAGAAGGCTGTGGACAGGTGAACCGTCCGGGGGTCTACAGTGATGTAGCCAAATATTTAATGTGGATATATAGCAAGATGCAG
Seq A exon
GTAAACACAAAAGCATTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACAACCCTAACCTTAAACCTACAGTGTAAAAATTCTTGGTTCCACACAATTGTTTTTTTTATTGGGACAACATGAAGGAATAATATTAACTTATTTTATTCATTTATTTATGTATTTATTTATTTATTTATTTTTTTTTTAAATTTAAGTGAATTGAACAGACAACAATTAAGATATCACCCCAGAAAACTCAAGAATTGTGTTGTTTCAGCTCATTTTATAAAGGCCTTTTGAAAAATGGAAACATCAGCAATATCCAGTGGTGGAAAGAGTACTGAAACATCATACTTCAGTAAAAGTACCACTACTTCCCTAAAAATGTAGTGCAAGTAGATTAAAAGTATCTGTTATAAATAATGCTAAAAGTATGAGTAAAAAATAGCCTTTTTAAAACTACTCAAGAGTAGTGAGTAGTGAGTATTACCCTGTGAAAAGCTGATGCATTTACATGTAATTTGTAAATGTGTGTAAACGTAACAGTCTGCAGTGCATTTAGTCATTGCCCAGCAGGCACAAGACATCATAAGATGTTAATATTAGATTAGGTTCAGGTCGTGATGTCAGGTGACCAAAATTCAATAGCCAGCGTCTAAGCATAACTTTATTCTGATGTCAAATAACGACGTCAAATGACACTGATATTTGGTTGATTATAGGTTTTGTTAGAAAGTGACCAAATTCCATCGTCGAATACTGACATTTATTCATCAGGTATGGCAACCAATATCCAACATCTAATAGACATCATAGTGGTAACGTCCACACAACGTCAAGCTGTAACATTATCAGATGTTGATATTTGGTTGATTTTAGGTTGGACGTTTTCTAATTCCCATAGACAGAAAAAGTATAGTGACTGCAGGTTGAAGGAAAGTAGTGGAGTAAAAGTAACAAAACTGCACTAAAAATGTACTCAAGGGAAAGTAAAAGTACACATTTTTAAAACTACCTACCAAATTACAATTTCGGAGAAAAACTACTCAATAACAGTAATTTGAGTATTTGTGATTTATTACTTTACACTACAGGCAATGTCCTCATCATTGCCCATCTCCTTTGTATGTATAATAGTTGTGTCCTATGGCATTATACAGCGTTGTGACATGATATGTCACACCAGGCCTGTAGCCAGGGGGGCTATTTAGTATGCCATCATAAATTGTGAAAATAACCAATAGAAGAAGGCTTTAAGACGAATAAGCAATAAAACAACCAATAAAAGAAGGCTTTAATTATTTAAATGGACAAATTCTGACTGAGGAAATGAGCTAGCAAGAAATGTTATTTGCATATAAGCTACAGTTTTAACAGATTGCAATATTTTTTATGTCTTTGTTTGTTTTTTGAGATTGATGACAATTAATGAGCATTTAACAGATTAGTATTTTTTCATATTTCTAATATTTACATTACATATGAAACTGTAATAACTTGCAGTTTAAATGTACATTTGTAAATAAACATACATTTTTGTAAACAAACTTTTTTTTGTACAAAAATGTAGGAAGTATTTTTGTTGCATCAAAAAGAATGGTAATGATAACCATCCCACAAATTAATCCAGCACAAATTAGTGCTTAAAATGTCACTAAAATGCAGTATTTGAACCTTATAATTTGAGGCGAATAACTGCAAAAAGGTCCACCCCTTTTAATAGGCTGTGGCTACGGGCCTGCACACAGACTTTCACAAATGACAATTCTGCCATCAAAAATCTATTTAAGTTTCTTTCTTCTGAAACACACGCAAATATTTTGAAAAAGGCAGATAGCTAGCACTCACTGACTTCCATAGTATTTCTTCTTCTACTATGGAAGTCGATGGGTCCCAGCAACCAGCATTCTTTAAAATATCATCTTTCGTGTTGAACAGAAGAAAGCAGCTCATAAAGGTTTAACATTTTTGGCTGATCTATCACTTATTTCTAAAATCGCTTTTCTCTCACAACTATTGTTCTATTCCTGTCTCTTTAATTACAG
Seq C2 exon
CAAGCACGACCATGACCTTCGACAATCATGAAGAACACACTCATTGCAGATTTGATAGCAGTTTTGCACAGAATGGAACATTTTTTTCTCATTTTTAAAAAAAGTGAAACAGTAAAGCAACATACATTTAGAGTAAATACATTTTTTAGTAAGACTTTAAATTCATAATTTAAATCATGAAAATTCACTTATTTTTTACTGTGTAATTCAATGTATTTATTTTCTAGACATACTGTATGTACTGGAATAAAAACCTGGACTACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000077573:ENSDART00000084839:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PD(20.1=88.5)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]