RnoINT0153339 @ rn6
Intron Retention
Gene
ENSRNOG00000016397 | Tmprss13
Description
transmembrane serine protease 13 [Source:RGD Symbol;Acc:1310872]
Coordinates
chr8:49648556-49650860:+
Coord C1 exon
chr8:49648556-49648708
Coord A exon
chr8:49648709-49649350
Coord C2 exon
chr8:49649351-49650860
Length
642 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
TTTCTTGGTCTCTTCCTCAGAGT
3' ss Score
9.6
Exon sequences
Seq C1 exon
GGAGACAGTGGAGGACCCCTCGTCTGTGAGCAGAACAACCGCTGGTACCTGGCAGGAGTCACCAGCTGGGGCACAGGCTGTGGCCAGAAAAACAAGCCTGGGGTGTACACCAAAGTGACAGAAGTACTTCCCTGGATCTATAGAAAGATGGAG
Seq A exon
GTGAGTGTTCAGCTCAGGGATGGAGCCTGGAGGAGGGCGGAGGATGTTCAGTCAGAGGCCATCTGAGCCATGCGCATTTGAGGATTCCAAGACAGGACTAGATGTCAGGCATGGGACCAGCCCAAGATGTCAGTTTTCCCTCCTTCTCCTCCCTTGGAACAGAGCCCATAGCATTGTGAAAGGGTGAACTTTGGTAAGAGGTCAACACCAACATAATTCTCTCCCGGTGATACCCAAAGGTATCTAAATTAGCCACTAGAGTGTGCTAGAGGTTACCTTCCATGGCATGAAGTTGCCCCTCAGTTCAGCCCAACCCTGCTTCCTTATCATTCTCCTGTCTGTAACTGTAAGGCCCAGGGCTATGGTCAACCCTCCCTCTCTCTGTGGGCAAGATGATAAAGGACTCGGAGGGAAACCCGCATCAGACACACCACCACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACTGCCTTAAGCCTCAGGGTACACTTCCTCTTCGTCAATGAATGTGCTAACTAGCATTGGGCTGGACTGAATGGTAGGCCCTAGGCTCTCTAGTCCTCGAGATGCTGTGTTTCATGCTTCCCCTGTTTCTTGGTCTCTTCCTCAG
Seq C2 exon
AGTGAGGTACGTTTCCGGAAATCTTAGCCATGCCCTCCTCACATTGGTGACTGCTATGAAGATCCTGGCCAAAGGGATTGGCCATTTGCAACACCTGGACCAGTGACCACCAGGCCTCTTTGTTCATTCCACCTCTGCTGCTTACTGTCTCTGTGATAGTGTCTAAGTGGTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCTTACTATTTTTACAAGTTCTTCAGAAAACAGGAAAACTCTTCTCAGAATCCCAGGCTGGAAATCTGGAGTTAAGAGTTTGGGCACCAGGTGTGTCCCTAAGAGTCCATAAGTGGAGGTGGAGCCAAAAATGAGCCCAGGAAGGGCTTGGAACATGACAGCAGCAGTTGTCGCTCTTCTGACTCCAACTTGAAGACCAGCTTGGTTTGGTCAGACCCTCAGCAGTCAGTGACACCATTGCTGTGCTGGGGTAGCATAAAGTTTTGTCAGAGGCTGTCTTTTCAGTGCCTGGACCATCTGTCCCCTGTGGAAAGCCATTCCCATCTGTGCTGCAAGCATCCGGTCTCTCAGTCCCTTGTAGCTGCCATGGATTCCAGAGCTGGGCTCTGCTGTAGCTGTCCATCTCTGGGTGATGACTGTGATTCAGGCTTGTGTATGTTTGGTCGCAAGCTGTTGGGGTGGATTTTATTTTTATATTTAAAATATAGAAATAGATGTAACTTTAAAGAGTCTCCAAAATTCCTAGGGACCTTGGGAGTTTTTGCATGAATCACCTCATGAACTCCAGGGGACCTGTGGGAGATGTACCGCTGTAGCATCCTGTGATAGATTACTGGTTTAGGAAATCAGGAGAAGTGCCCTGATGAAGTCCTCAGGACAGACATCTCCAAGTCGGTGTAGAGACTAGGGACCTTTGAAATACTCAGGGAAGAAAACCCTCGATTGGATTGGGTTGATCAATAAATCCAGTGCATACTGATCTGGCCTCCAAGGACTCTAGCCAGTCAGAAGATGTGTGCACTGCCCTGGTTCGCCTCCACCTCTGAGGAAATCTACACAGACAGCGTCCATTACACCCAAGGGCTGACTGTGAAGTTTGCTTCTGTCATCCTTCATCGTTCAGCCTTGTACTGACTCAAAAGGCCATAAAGAGAAAGCAAGAACTGTCCTCAGAACCTCTAAACAGTCCTTCTGGGCAGCCTAAGTTGACCATGCTCCTGGTCTTCCCTGGGCCTTTTCTCTTGGTCACCTGCTGTTCCTCAGCTCCACTCTCTTCAACCTTCCGGTGGGCCTACCTGACCTCTTGTGATACTGAGTCTCAGAGGCAAGTTCAAGGAGATCAGACCAGTTCAGGACAGCTCAGGACATCTGGAGGTAGCTGGAGTGATTGGGCAGCATCAGACAGGGCTGGAACACTAGGGAATCTCTTCAAGGCTGGGAAGGAGGCAGGCAGCATCCACGTCTGCAGAAGATCCCAGCAATGAGCTTCCATAATAAAAGTGTGTGGCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016397:ENSRNOT00000021949:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PD(19.7=88.2)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAACAAGCCTGGGGTGTACAC
R:
TCCAGATTTCCAGCCTGGGAT
Band lengths:
353-995
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]