GgaINT1028207 @ galGal4
Intron Retention
Gene
ENSGALG00000004538 | TNN
Description
tenascin N [Source:HGNC Symbol;Acc:HGNC:22942]
Coordinates
chr8:7070910-7071994:-
Coord C1 exon
chr8:7071901-7071994
Coord A exon
chr8:7071366-7071900
Coord C2 exon
chr8:7070910-7071365
Length
535 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGT
5' ss Score
9.66
3' ss Seq
TTCCTTCTTCTTGAAAGCAGCTT
3' ss Score
2.71
Exon sequences
Seq C1 exon
ATTTGGAAATAAAGGAGGCAGGGAAGAAGCCCTACCTCAGCAGCACAACGTACCCTTTCTCCCCACTCCTCTTGCAGGAAATTAAATCTGCTAG
Seq A exon
GTAAGTGCTGAACGGAGGAGGGAGAAGATTAACATAGCAAAGTGCTGCTTGTGAATGAGAAGCAGAGATGGTTGTCTTATTTAATTAATATAAAAGTAAAATGAAATCAGTACCCTTTGCTTGACTTCAGTGAAGATCTTCTCACAGACAGGCCATCAAGCTTCTAGTTGAAAATCATGCTAGCTGAGGTGCCGCTGGAGATCATTTACTCCAAGCAGAAGACATTGGTAATCGTAATCTGGAGCAGAGCTAGAAGACGGTCTGTTTTAGCTGCATGGGGATGAAAAGGGTTATGGCATAATTAATAGTTGTGTTGGACTGCAATACTGAGTCTCGTTTAAGAAGTACAAGTTTAAAGCTCCTAGTCAGATCGGTCTAGAAACACTCTTGATCTAATTGATACAGTATGACTCTTTTTGCAGGTACTAACCAACCTTATACTAAATCAAGGCAAAGTAGAGTACTTGTGGAAAATCATGAATACCAGCCTTATGATCACATTTCTTACATTTTCTTTCCTTCTTCTTGAAAGCAG
Seq C2 exon
CTTTGCTGTTTAGGGGTCAGTGCTTCCTCTTGAAAACCTACTGGATGGATTTCCAGAGCTGCTTTGCCTTCCCCATTGGGATATTGTTATGCTGTGCTCTTCAGGCATCTGCCATTCAACTTCCTGCATCTGAAAACTGCACCAGCAATGGTCAAAGAATATCCTTCAGCCACTCCTACAAGATTGACCTGCCCACATCCTCCCAGATCAAGGTGGAAGCAGATCCATTGCAGCATGAAGGCAACAGTGGGGTACAGCTAGATCCTGGTGAGGCTGAGGAAAATGAAGAGCAGGATATCATCTTTAGGCACAACATCCATGTGCATGCACCTAAAGGGAGCTGTGAAACTCTGGCCCATGTTAAAGATCTTCTTGAGAGGATGGAGAAGCTAGAGAAAGAAGTTGCAGAGCTGAGAGAAGTCTGCAGCCCTCAGAAGTGCTGTGGGGGAAGCCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004538:ENSGALT00000043017:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.188
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAGAAGCCCTACCTCAGCA
R:
TCAGCCTCACCAGGATCTAGC
Band lengths:
350-885
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]