MmuINT0163291 @ mm9
Intron Retention
Gene
ENSMUSG00000026725 | Tnn
Description
tenascin N [Source:MGI Symbol;Acc:MGI:2665790]
Coordinates
chr1:162077578-162083706:-
Coord C1 exon
chr1:162083613-162083706
Coord A exon
chr1:162078020-162083612
Coord C2 exon
chr1:162077578-162078019
Length
5593 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
TTTTCCCCTTCTGGATCTAGGCC
3' ss Score
10.17
Exon sequences
Seq C1 exon
GATATTGAGGGACGGATCGGCAACGAAGTCTCCAGTACCAGGACCAGCTCACAGGAGGCAGGGGGATTGGAAGTGGTGCCCAGCAGCCTCCCAG
Seq A exon
GTAAGAGTGCCAGCTCCTTGAGGCTTTATCATCGATTGGGAGGGGGACAGTCAGTGTGGGGAAGATTGTAGACTGACGTGCATTGTTGCAAATCTAGGCAAGGCAATATAGATTAAGTTCAAACTATCTCCCAGGGCCTGTGAATCATGTCCATAGCTGGTATCAGACTCTGCCCTCCCCAAGCCAGGAGACACCATCCCCTTACCTGCCAAGCTCAGTGCGTGGGGCACCAGATTCTACGCGGAGCAGTGCATTTTAGATGATGTGTTTTCTTTAAGTCTATTTGTGTTTCTTCTTACACAGACCTCTTCTCTCCGTGTAATCTCTTATGTGCTATAGCTCGTTGTTCTCTTAAAACAGAGCTTTCAATCTGGCTGTGTTTAGGAAGCTATGCCTAACTTTCCCCTCTTTGAGATTTTTGTGTGAACCGATGAAGATGATGCTTGCCGACTCCCTCGAAGGGGCTCATTGAGTTGTCTGTGTTTTAATCATTACATGACAGAGGAGACTTTCTCTTCCCCTACTGCACTATGGTTACCCTCACAGTGCCTCAAAGCGGGCATTTTCAATCACTTCAAGAGTGATGTGGGACACTGGTTTTTGAAGATCTGAGTTTTTATTTTAATTTTTGTAGGGTGGGAGAGGGCTGGGTGAAGAGGGTAGAGGGAGAGTCTTCACCCTCTAAGGACCAGATTAGCTTATATAAGCATTGACAGAATCATAACTTCAACATAGAAATATCAGATTATCCACATCTGTGCAGGTAAGCCATGGCTCTGCCCAGTTGCAGACTCAGGGTGATGGTGACAGTGTCAAGAGAAGACTCAAGAGGAGGGAGCGAGTATCAATACCAGGGTCCTTTCCCTCAGAAACAAAGGAGAAACAGGGCCTGACTCTCTCTCATGCTACTCTGAATTCTTTTAATGTCTTCAAAGCAAAGAAACTGGGCAGATGATTTCCATCCCATCTTGTGGCTTCTGGCTTTCACTCTGGTGCCGTGCTGTAGGGTAGACCAGCTCCTTCTGAGGAAATTATACCCAGGCCCATGGAAACTCTGCCCCTTCCAGAGCCCTGGCTCCCATAGGCTCTGGCTGCAGACATGAGGTCATAGTTTAGGTTCTGTTGGAGCATTTGGAACCACCAGTCTGCAAGCTGATGGTGTTGTGGTATCAGGCCTGGCTCCTGATGGTCAGCAGCTCGGCCTGGTTCCACCCCAGACGACTCAGGCAGATGCCAGCCAGCTGCCATCTAAATATGTGCATAGCCCATGTAGGCAGAACGGCGCAAATTCCTGGAAATTAGCATTGGCTCTTCAGCTTGATAGAAGGCTGGAACTCTAAAGTTGTTTCAGTGTGTGGAAAACCACATTAAACTGAAGGGAGAAATTGTAACTTCTCATTATGCATCTCTCCTCATTAGCACTCACCTGAAGCAAGTCCCCATCGTGGCTGTGGAGAATAGAAATAATTGTAGGTCAGCAAACACTTTATCATTTTGGGGGACTCGGTTGGTAAAAGAAGGTTCTCAAATTTAGATCTCGTGTCTATTTTATCTCCCCATTGTGGGTGAGCCTGGACTATGGAGGCTAACGGAAAACCTTTCTGTGAGAAATTAGTTCATTCCCACAGGGATAAATGATCATCTTTGCCTATTGTTCACAGACAGCTTTTAAGGCTCTTGACATAGAAACTGGTATATAAGGAGTGTTTAGAAAATGGTAGCTACTATTATCATCATTCACTGGGCCCTTTGCAAAAGGCAGATTAAGATTTAGTTGATAAAAGGAAATGAGCCTGTCGAAACTGCTGAGAAAGTAGTTGGGCCCCAGGGCTGAGCCTCATTCATTGTCCTTTCTAGTGGGTAGGCTACTTATATAGTCAGAGGGGTTGTTGCACAAGGTGTAAGAAGTCTTACAAACACTCCCTAGGAACTCATTCAATAGACCCAGTGGACTTGGAGCACAGGAGCACACAGCCTGGAATGTGCTGTCATGTGCTGTTTTATAGAGCCACATCTTCTTCATCCTCGACCTGTCTCACATCCTGTACAGAGCCACAACTAAGAATGTTTGTATGCATTTGGCTCAACTGGAGGGTGACCTAGAGGAAACAGTGCTGTCTCATATCCTAGATTCTCTTGCAAGCTGAAGAATGGGAAATGGGGACATTGGTTGTCTGAGATCTCACATCCAGGATGGGTCATGCCTCAGTAGGTTGTTTAGCTCCTTGAGAACTTGATTTTCTAGACCAAGTATTCTAGTCACAAGACTCAGAACCACTCAGGGGCCAGGCTGTAGCACACTGGCAAACTATGTTCAAGAAGAATAAAGGAAGGAGTGAAGGTGGCCAGTGATATTTGTGACATCAGGGCATCCTTAGCCACCTACTCTTTCTTTTTTCTTCATTGTTTACCGAGGTCTACCCTATTATTTGGGGAGAGAATATCTTCTTAGTGACTCTACTGGAAACCCACCGTAATACAGCTTTTCTAAGACCCAAAGCAGTACACTCATTTGCTTGTGGTTAACCATTAGGCAGGATGAGGTCATGAAGGAACAGAGAAAGGCCTGAATTTAAGTACAAAGCTCGTTGCCAGTGGCTAGAAGCTGGCAACTGCTCTATTTGAAGTAAGTAGCATTTTTTCCTGACTCAGTGTGTGTCTTTCTTTAGAGAAAATGAGGTGACACAAAGGCCATACAGCTCTAATGAGAAGTCCTTGTGAACTGAGAAACATTCTCTCCTCCTAAGGCTTGGTTGACATATGCCCTCATGGATAGAGGTCTTGGTAGTCTCTGCTGTTTCCTGCCTTGTGCTGGGAAGTGGTGGGACCTTAGCTTTCTGTGAGGAAAACACAATTCATCTTCCCAGGCATCAGCTTGCTCTGGCTGAAGGCCAGGCAAGTCCAGGCTTCCATTCCTGATTTATTAAGGTTTTGTTGAATACCTGGTATACCTTGGCTTTCCTTTCCTTTCAGAGCCTCTCTCTTGAAGGAAATATAGCAGGAAAGAGGATATTTGATGTTTTTCTTTCCACATCTACAGTTTATATTGCAGAAAGATGAAGAATCCAGACACAAGGAGTGGATAAGCCTGGTGTGTGATCCTAGTTTTGCTGTTTAACTAGTTGAATGCCCTGACCAAATTACCTAACATTTTGAGTACTTATGACAAATAATATTGTTGATTGACTGTCATCATTTTGAGGATTAATTGAAGCTAATTTTTTTACTTGTTTGGCCCAGTACCCACAATCTAATAATCACACACAAATCTATTGTCCCTTATTATGTAACTCACACACTATTTGGCCAAAGCTATGATGTGTAGCTAGAAAACAGGAGGGACCTGTGTCATCCTAGCCTCTACCATCCATGAGCTGACAGCATTCTGGGCAGGGAACAGACTTGGATTTTTACATGGTCGATTTTGGCTAGAAATTAACACCACAGGAGTGGCTGCAGCTATGAATAAGAAAGAGCATAGAACCCTGTGATGCTAGTGCATCTCAGGCAGATCCACAGGACCATCCATCTAGGTTGCACTGAGCAGTCAATCCAGAGCAAAGCCTTTCTCATGGTGGCCACAGTGGCAACAGTTATTACAGATACTGTCTCAGTCCTCCTCACCACTCAGTGCTCCTCCTCCTGCAATGAGGCACAGCTTTAGTGAGACAGTAGTTCCTGGAGGACCCCTGGTTTCCATGGTTTCCCGTGTATAAATGCCCTTTGCCTCACGAATTCCCCCAGTATCTCTCCCACTTTCCATCAGGAGCTTCGTCACAAAGAATCATCTTTATTCAGAAATGTCTCAACTGTTGTTTGTCTTGGGGAACCGTCTGTGGTGTGCCATGCATATTAATACAGAGGATGAAGTCATGCCTTCCTCATGCTGCTCAGCAAGGAGAGGCTGTCTCCTGCCACACACTGGAGCCAGAGCCAGCAGCTTCCCTTCTTACTCACACTTCACAGTGCTAGATAGATTGAGGATTTCCCCTGCTCGTCTTCTTTCTAGCAATCACTCTGCCCAGGAAAATCTGAGCTCAGCGTGTGCAATCTGAGAGGCTGCGATTAGCAAGGACATCTTGTTACAATTCGGGACGGGCGACACAGAGGGTTCCTTCAAGAGCTTCTGGGCCTTCTCATATTCCAGGCTTCAAAAGCAAACAATGTAAGACAGGGTTTTGGACAGCGCTTCTGTGGTTTATGGCAGGAGTTCCCCATTTTTTTTCATTTGTTAGGAAACTCCTTTGGGGGGAAAATCTGCATCCCATTTAGGGCTCAGGAGCAGTGAGCATGCGGACCGTGGCACTGGGTGGTAGGAGTGAGCAAAGAAGTTGACTTGGTTGGCTCTATTGTTGCCCAGAGGGGATTTGCGGTAGTACAGACCATGCCTTGCAATACCCACAGTAGGTGCTTGAGTGGGTGCAGCAGATCTCAGAAGCGAAGGCACTATTGCTCACTGAGTTAAAATCTGTGGCCTTGCACTTGGTAGTCACATAACCAGCAGCAAGTTGTTATGGTCGCCACTCCTTAGCTCCCAACTTCAGAGTCAAGCGGACAATTTGTTTTGTTTTATCACTAAGATAAACTTTTGAATGAATCTCTATTCCGTATTTCTATTCCACACCCACCTTCCAACTCCTTTTACTGGCTCCCCCATTCCACCTTCTCACTCACATCCCTGGCTTTCCTATTTAATCACTTTCCTGAACTCAAATCCTTTTTCTTGACAGAACTCCCATCTACTCCGGTGGACAGCCTTTCTTATTCCCTGGATCAGGTTGCTAGGAGCTGCATAATATGAATGTCTGTGATGGGTTTGTGTGTGCTTGGATGTAGTCCTTTCTCTTCTCTCAACTTCTATCACTGTTTTGGCGTTTCCAGGTTGCTTTCTGAGGTACAGTATTATACAGGGAAAAGGATACCCCTCTACCAAGGCCCTATCATTAAATTGCCTCTGGCTAGTCAGGTACCCATCTCTTTGCCTGCCACTCAATTCCATTCATTCTGGCCTCACCGACCTTCCAAACTTTGAGGAGATGAATGGATGCTTGCTACCCACTCATTAATGGAATCCTGGCAGTGAGAGAGGCCTCCTGACTGTCCTATTTCATCTGGAGAGGGTCCCGGTGCCTAAAACATAGAAAGAGTTTGGAAGAGAACTAGTTTCACTGCTATTAATAGCACATGCCTTAAAGGACAGCAGAGTAAGGACTGAGTAGCACACATGGGTCATATGAAGACCCCTCTTCTGCAACATAACTAAATGGATATGAAATCCCCATCACACAAAATAGCTAAGGTGTAATGATATGGAAGTGCTTCTTGCCCCCATTGGATCAATACACACTGCACACACGTGTTGAACTACTTACTACACTGTGCAACTGTTACTGTTGATCAAAGACATGGTTGATATTCAGGCTCCTATAAACACTAGGGACTAGGGAGATGAAAGGCTGGCTTAGGCAAGAGAATAGGAGCCCTTTTTGATACTGTGAACAGTGTGTGGATGCTTAGGATCTGTTAAGAGAGGGTAAGTTCCATTCAGCCAGCCCTCATGGCATTCTTGGTTGTTTTCCCCTTCTGGATCTAG
Seq C2 exon
GCCTCCTGGAGTGTCTGATCCCTTTCTCCAAGAATGGGTCTCTGGGGGATGCTCGCCTTCCCCCTGGGATTTCTGCTTGCTTCTGTGCTCCTGGTGGCTTCGGCCCCAGCCACTCCAGAGTCTCCCGGCTGCAGCAACAAAGAGCAACAGGTCACTGTTAGCCACACCTACAAGATTGACGTGCCCAAGTCTGCTCTGGTTCAAGTAGAGACCGACCCACAGTCACTCAGCGATGATGGGACATCACTCTTGGCTCCCGGGGAGGATGGGGAGGAGCAGAACATTATCTTCAGGCACAACATCCGTCTTCAGACACCGCAGAAGAATTGCGACCTGGCAGACAGTGTCCAGGACCTGCTAGCCCGGATGAAAAAGCTGGAGGAAGAGATGGCAGAGCTGAAGGAGCAGTGCAATACCAACCGCTGCTGCCAGGGGGCTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026725-Tnn:NM_177839:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.255
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: