HsaINT1044787 @ hg38
Intron Retention
Gene
ENSG00000120332 | TNN
Description
tenascin N [Source:HGNC Symbol;Acc:HGNC:22942]
Coordinates
chr1:175067858-175077827:+
Coord C1 exon
chr1:175067858-175067935
Coord A exon
chr1:175067936-175077383
Coord C2 exon
chr1:175077384-175077827
Length
9448 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
TGCAATGTTTCTGAATACAGGCA
3' ss Score
5
Exon sequences
Seq C1 exon
AAGTACCAAGGTCTGCGGCAGGAGGAGACCGGCTCACAGGAGCAGCAGCATTGGAAGAGGCACCCAGCAGCCTCCCAG
Seq A exon
GTAAGAGTGCCAGTTGCCCAAGCTTTACTTACTGGAGGGAGGGAGGTGGCCAATGCAGATGAGCTCAAAAGTGGTGGCTCAGGTGCCTCCGTTCCCGAGCCTGAAAATCCGGGCAGTGTAATTAGTCTCCTATCACCTCCATGAAGAGTTAAAATGAATTGGGAAGTACCTCTCAGGACCCGTGTACTGCATCCTTAGTATTATACTCCAGTCTCAGACAGGGCTAAGCATAGTTATCCTCTTTCCTGCAACACAGATGCGTCTGTGTTGTATCAGCTTCTACCTGGCGTAACACATTTTTGTATAAAATGTTTCCTTTAAGATGTTCCTTCTCATTTTTTTTTCTTTTTAACTTACTTACAATGTCAAAGCTTTCTCTCTCTCTGTCTTTTTTTGGATAATTTAGTATTGTTGTATTTCATTATTCTTTTAAATCCTAAAACAGAATTGTTATTTTAGTTATGATTAGGAAGCTATGATAACTTTCCCTTTGTCTGGATTTTGTGTGAATCAGTTAAGGGGATGTTTGCAAACACATTTGAACAGCTTTGAAGTATCTCCAGACATTTAATTTTACAGGTTTTAATTATTATTTGTTAAGACGACAACTTCTCTCGAAATCCCCATACTATTACCCTCACAATACCTCAAAGAAAACATTTCAAGACATCTAAAAAAATGATGTGGTTGGCCGGGCATGGTGGCTCATGCCTGTAATCCCAGCACTTTGAGAGGCTGAGGCAGGTGGATCACCTGAGGTCGAGAGTTCGAGACCAGCCTGACCAACATGGAGAAACTCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGCATGCCTATAATCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATTGCTTGAACCTGGGAGGTGGAGGTTGCGGTGAGCCGAGATTGAACCATTGCACTCCAGCCTGGGCAACAAGAGCAAAACTCCATCTAAAAAACAAAAACAAAACAAAGCAAACAAACAAAAAAAACTAGTTTTTGGAGGTCTTACTTTTTACTTATTTATTAATTTTTGTGCTTGGGAGAGATCTGGGGGAAGGATGGAGAAAGAATGAATGAGAACAGGCAGGGCTTCACTTAAAAGCATGAAACCTGTGTTGCTTATATAAGCATTAAAAAAAAGAACAAGTTCCAACATAAAAGTAACAAACTGCCCACATTGGGACACAGGTTAGCCACAGTGCCTAAAATCCACTGGTTCTTGGAAAAGCTGAGGTGTCACCAAGGCATCAGATGATACCTTGCTCGGTCAGGGCTACGTATTGGCAGCTGGCCTCTTGACATTCAGACATTTGTTGCAGACTCAGAATCAAGGTGACAGTGTCAGACACAGGAAAAAATAGAGTATCAATACTGGTATCATTTTTCCAGGAGAGAAGGGAAGAAGGCACCTGGCATTCTTTCATACAACTCTAAGTACTGCTTTGTCCCCAGTTTATAGGCTGCAGCTGACTCCCGAAGGAGGGAAAATAGAACAAATGATTTCAAATCATCCCGTGGCTTCTGGTTTTCCAGTCCAGTGCTGCTCTGTGGTTTGAAATGTAGGGTGGGCAGAGCTCTCTTTCTGAGAAGATGCCTGAGGAAATTGTGCCCAGGCCCAGTGGAAACTTTTGTCCATTCACTGCTCATTCCAGAGCCTTGGCTCCTATAGGATCTGGATACAGACATGAGATCATGGTTTAGGTCCTGTAGCCACATCTGGAGCCACCAGTCTGTGAGCAGAAGTTGCTAAGATCTCAGGCCTGATCTCTGGATGGACAGGGACTTTGCTGCTTCTGCCACAGTGGACTCACTGCTAATGCTGCCCAGCCACCATTTGAATCTGTACCCAGCGAGTGTGAGTGGAACAGTGCAAATGCTTGGAAATTAGCAAACGCTCTCCTCCTTGCTAGAAGACTGGAACTTTAAAGTTACTTCAATATGTGGAAAACAACACGTTAGCTAAAGAAAGAAATTGCAGAGTTTTTTGTTTTGTTTTGTTTTAATCTGACGCCCCTCACACCCATGGATATTAGGGCTAATTGTATACAAAGTAATATTTAGTCATTCTGGGGACTGGCTGTTTGGTTGAATAAGGGAGAGGAAGGTTCCTGAATTTAGGTCCCGTGTCTATTTTATCTTGTTATTGTGCATGAGCTTGGTCCCACAAAAGCTAAAGGAAGTTCTTGCTGTGAGAAAGTGATTCATTCTCTGGGGGTAAATGAACATCTTTGCCTGATGTCCAAGAGGAGATTTTAAAGTGCTTTGCACAGAGCCTGGCATGTAATAAATGCATAGAAAATGGTAGCTACCATTATCATCACTCATTTGAGCCTTTGCAAGGCAGATTAAGAGTCAGTTGTCAAAACAAAACAAAATGAGCCTGTGGTCACCCCTGAAAAAGTGATTGAGTGCTGAGGCTGGGTCAGGACACCATCCTTGATCTTTTCAAGCCTCAGGCGGGTGGGCAGACTTGATGGGATGGCTCTCCAGGAAAAGGGTTCTAGCACGGTGGTGTGAGAGTCATCTCCAAGGACTTCCTGGACACTCCCTGGGTATCCCACAGAACTAGGAGAATGGGGGGACAGAGTGATACCCAGAATGTGACCATACTAAGCCCTATCACATAAAACCAAATTTCCATTCTCTTCCATACTTAGCTGTCTTGTATCCTATATGCAATCCTATATTCAACATCACAGAGACTAGAAATAAAAATGTTTGTATGTACTTGCTTCTACTGGAGTTTAACCTAGGAGAGACAGACCTCCCTTGTATATCCATTTTCTTGGATCTGAAGGAGAAAGAGATACAGAGGTGAAATCGGTCCCCTAAGCCTCTAGTTCAAGGTGAGTTGAGCCAGGGTAGATTCCTCAGCCAGCTGAGAACTTGCTGTCCTGGACCAGGTTACTTGGGAAGTACAGGGAAGGCCCCTGAGTCACCCAGGGCCCAAGCTGCAGATCATTAGCAATATATGCCAAAGAGAGTTAAGGAAGGAGTGACAAGTTTGCCAGTGACATTTGTGACATTGATGCATCCCTAGCCACTCATCTCCCTCATTTTCCTTCATAGTTTAATGATATCCACCCTGTCATTTGGGGACAGAATATCTTCTTAAGTGACTCTGTTGGAAATCCATGATGATACACTTTTTCTAAAACCCAAAGCAGTGCTTTCATTTTCCTGTGGTTAACTGTCAAGGCAGGATGAGATAATAAGGGAACCAGAGAAAGCCCTGAATTTAAGTATAAAGGTCTGTAACAGTGGCTAGAAATTGGCTACCTCTCTTCTTTGGCGTAAGTAGTATTTTTTTTTTCCTGACCCAGGGTGTGTGTCCTTCTTTGGGGAAAATGAGGTGACACAGAAACCATCCACCCCTGGGGTCCAAGAGGACCATCAGGATTCAGGGGCCATCCTCCTCCCTTGGCCAAGGCTTGGATGCCATCTGCCCCTGCAGACAGAAGTATCTGTGCACTTTGGTGTTTCCTAGGAAGGGAATTCTCCAGCTTCTCATGAGAATTGACTGGGACTTAACCTCTATGTGAGGGAAATGCAATTCATGTCCCCAGTGGATCATCCTTGGCACCACTCAGAGGAAGTAACCCTCTCTTAAAAACACATGGCAGAACGGAGGACATCTGGTGTTTTTTTTGTTTTTGTTTTTGTTTTGTATATACAGGACATATAACAGACAGATGAAGAACACAGACGCAGGCAGTGGACAGACCTGGTGTGTGATCCCAGCTCTGCTGCTTTTTAGCTGTGTGTCCTTTGGCAAATTACTTAACTTCTCTGAGGACCTGTCACAAAGAATGATATCAACTGACTCCCAGGACTTTGAGGATTAAATGAGGATAATTTTTATAGCGTTTGGCACAATGTCCATTATCTAATAAGCACACATACACAGACACACACAAATCCAGTGGCTATTACTACTTACTTCACAAAATATTACTTTGGCAGGACTGTGCTATGAGGCTGGTGATACAGAGGGGATCAACACAGTCATGGCCCTCTCTGTCATCTCTGAGCTCACAAGGATACCTGGGCTAGAAACACGCATACAGATTTGGCAACTGTCAACATTTGGCTGGAAATTAAAGCCACAGGGGTAGATGCAGATACCAAGAGAGAACACAGCAGAAGCATAGAGCCCTGCAACATCTGAAGGCAGAAGTAGGGGGACCATCCATGCAGCCCATGGTCAGTCGTGTACTCCTCAAAGAGCCTTTCTGGTAAAAGCAACACAAGGCAGCATTTGTTCCTGAGTCTAATGTATCCCTCCCTCCCACCTTCCCACACCACCCAACACCCCTTCTGCAGTCAGAATTAAAGACATGACCAGCCTCTGTAAGACAATGATTCTTGGGGACAACTGGTTTCCTGTGGTTCCTGCATACACATTTCCTGCATGTAAATGCCCTTCGCTTCATGCATCCCTGCAGAATTTACCCAACTTTCCATGGGAAAATACCCCTCAGCAGAATAATCCTCCCTATTTGGAAATGTATCATCCTGCGTTTTGCTCAGAAAAATCTTCTGCCCTGTCTGCCCCCTCCCCACCCTCGCGGAGCTCAGCCTGTGGTTTGCTGTGCATACTGAAAGAGTCGATGAAGTCATCCTTCCCTTCTGCTGTTAAACAAGGAGTCTCTTTCCTGCCACGTGTTGGAGTGAGAGCCAGCAGGCTTCTCTTCTTGCTCATTACACTTGACAGAATGTTAGGTTGAGGATTTCCCTTGCTCTCATCTTCTTTCGAACAATCAACCTACCCAGGAAAATCTGAGCGCAACTTGTGGAATCTGAGAGGCAGTAATTAATGAGGACATCTTGTTACAAATCAGAAGGACAGGCAACACCAAGGGCTCCAACAGGGACTTGTGGGAGTTCTCATATTCCAGGCTACAAAAACAAATGCTGTAGACCTGGGCTCTGGGCAGCCTTACTGTGGTTGATGGCAAGAGTCCACGGCTTTTTTTTTTTTTTTTTTTTTTTTGCTTTCGTTGAGAACTTCTTCAGAAAACCATCTGCACTTCATTTATGTCTCAGGCTGGGGGTGGGGGGTCGGATGGAAAGCACGGGCAGAGAAGTCTGCTTTTTCAGCCCTATTTTTGCCCAGGAAGAAGATTTTTGGACAGTGGAAACTCATGTGCTGCCATGAACACAGTAGGTGCTTTAGAGATCAATATGCGTTGTTACTGGTGAACGGCAGAAGTGTATAGGGATTAGTGGCTCCATTGCTGGACACTGTGCATCTGGGATTGCATCTGTGGCCGTGTGCTCATCAATTGCATAATCAGTTGCTCAATGCCACTGAGCCTCAGTTCCTATCCTGGGGATCAAGTGGAGAATAGCGTGTGGCTTTTATCTTTGTGATGAACGTCTAAGGATGGCCGTTGTGAAATATCATTATTTTTATCCTACACCTGCCTTCCAACTCATTTTCCTGGCTTCCCACTCCCCCCATCTTCTGACAAAAATCTCAAGCAGATTCCAGAGCTTTTCTGGTGGCTTTTGGTCTTAGAAGAGAATTGCTTTTGTGAAAGCAAGTCCATTTCAGTATTGAGCCTCAGTCTCTCATCCAGGCCACATCTTTTCTTCTTTCTCAGCTCAGACCTGATGCTGGAACCTGCAGAGAAGCTGGAGGGAAGGGGCTTGGGGCTTTCCTCCCTCCACTTCTCTCTCCTTAACATGCATGGCTGCTTCTGGCTTCACCAGTTTGCTGCTGCCTGGGGCGAGGTGAGGGTTAGAAAAGAAGGGAGAGGGCACTTTTACTTTACTGGGGCTGTTGTGGTTCCCTCTGTTGGATGCCCTTGTTATGGTGAATGCTTCCAGTGCTGGGCCACCCCTCCTTTGTGGGGAGCTTCTGTGGGATCTTTAGATATTCCCCTTCCCACCCACTGGGCATGTCCTGCTGCAGTCGCCCCCTTGGGGTGGCACACTCCTGCTGAACGGTGGACCTGCACCTCAGCTCGGGCCCTGAACTGCCCTCTTGGTAGCTCTAACATGCCTCATTTCTGTGACATCAACTTGGCCTCGCCAAAGTCTGAGTTTCAGTCCTCTCACACTGCAGCCCCCTTCCTCTCTCTGCCATGCAGCCTGTTCCAGCCAAGCTTCCACCTGTGAATTCCTCCGGGCCAGAATCAGGCACCAGTCTCTTTGCCTGCCACCCCCACTAATTCACCGTGACCCCACCCCCAACCCCCAAACCTCCAGTGGCACACTGTCTTTGAAATGTGTGGGCACGGCCAGGTGTAGTGGCTCATGGCTGTAATCCTAGCACTTTGGGGAGCTGAGGTGGACAGGCTGCTTGAACCCAGGAATTCGAGACCAGGTTGGGCAAGATGGTGAAACCCCATCTCCACAAAAAAAATACAAAAATTAGCCAGGCACTGTGACATATACCTGTAGTCCCGGCTACTCAGGAGGCTGAGGTGGGAGGATCACTGGAGCCCAGGAGGTGGACATTGCAGTGAGCCGTGATTGTGCCAATGCACTCCAGCCTGGGCGACAGAATGGGATCCTGTCTGAAAAAAAAAAAAAAAAAAAAAAAAAGAAGTGTGCAGGCACTTATTACCCATGGTCCAAGTCACAAGACAACAAGAAGTGTCCCATTGACTATTCCATTCCATCTGCCGGGTGTTGAGTCCAGTGCCTGAAATGCAGTCAGTTCTCAGAAGAAGTGAGCTTTTATTATTATCAACAATACATGCTTTTGGTGATAGGAAGAGCCATGAAGGAGTGGGAGGGCAAAGGGGTAACACAAAGAAAAACCCTTCATAGGTACCATTCTGCTTAATTCACAGTGGTGTCACATCCCTTGGGTACAACATGTATAATGGATGAAAGCATTGCATAGGGACATGTATCTAACTGCGCTCATTTGTCATTTGTATCAGAATGTCATATTGGCACAGAGCAAGCATAGGCTTGCAATCAGATGGGTCTGCGTTTGAATCCTGGCTCTGCCACTTCGTTGTTGGGCAACCCTGGCAAATGACTTTACCTCTCAGATCTGGTTTCCTTACCTTTTGAGTGAGGAGAGGAACACTGACCTTACATGGCAGCTCTGGGGATTAATTACGAGGAATAATGCACCCAGCCAATGCCTAGTGCGTAGCAGCAACTCAGTAAATAACATTTAGCATTTCATGCTATTGTGATTCTTCTTCTTCTTTTATTCTTCCAGGGCTCTTCACCCCCTGTTTCCTCAACTTCCTGATACTAAATGAATGATGACTATTAAAATTAAACATTTTACATATTACTAGAATTTGGCTTAGTGGCTAGAAATATTTCTTCCTTTTATAATCAATATAGTTGAAAGATGCCTTTCAACCTAGGCGTTATTATTATTATTTGAGATCGAGTCTTGCTCTGTCGCCCAGGCTGGAGTGCAGTGGCATGGTCTCGGCTCACTGCAGCCTCCGCCTCCCGGGTTCCAGCAGTTCTCTATCTCAGCCTCCCAAGAAGCTGGGATTAGAGGAGTGCACCGCCACACCTGGCTAATTTTTGTGCTTTTAGTAGAGAAAGGTTTCACCATGTTGGCCAGACTGGTCTCGAACTCCTGGCCTCAAGTGATCCTCCTGCCATGGCCTCCCAAAGTGTTGGGATTACAGATGTGAGCCACCGTGCCCGGCCAGCATTATTCTTTATAGCAGAACAGATGAGGAAGAAAAGGAAGTCACATTCAGTAAATCGATTGAAAATAAAATAAACCTCAAAATTTTGACTAATCCTTGCTCACATACCAGACATAGTGCTCACTGCTGTTCACATCTAAGAGGGGTGACGCGCTGTCATTCCCACGTTACAGACAAGGAGGCGGAGGCTCAGGATGAGGAGCATTTTTAGGGATGCACATCCTACAGCCTGTCTGAGGTGCCTTTCCACCATATCCCAACTGCCTCTCACCACGGGCAGGGAGAGCCTGTGCTCAAGCAAAACACAGACCACAGGAGAGGACTGTGTTTCCTGACTTCAAATTTTGGCATAAATAATTGCAGGTCTTGGGTTAGTTACAGAAACCCATTGTCAAGAGACAGCTCTGCAGATCACTTTCTAGATAACTGCTGCTATGCAAGCCCAACTGGGATGTATCTTGTGACTGAGGTTCCTGTGAGCAAAATGTGAGGTGAAAGCTGGGTCTCTTGTGGTCTGTCCTGCCTCAGCTTGTTAGTGTGCAAAGAATGGGCCGTCCTAGATGGGGGTTGGGGGCACAAGGGGAAATGGCTGGAGAGAGTAATTCTGCTCATTGACAGTGGTGAAGACACCACCTCCTGGTGAAGGAGGAGGAAAAACCTAACCACCTGCCCCATCTCAGGTCGCCTGGCTTGACTGACAAACCAGGCCACCCATGCACGGATGGATTTGAGAAACAGTGACCAAACCTCTCCGCATGTGTGACAGTGCTCCTGCCACAGGAGGGCCCCAAGATGAATCAGCCCAGTCCTGTCCTTAACAGGCTCACGGCCTAAGACAAGCTGCATACAAGAGTAACTGTAACACCAGGTCAACGCTCAAGAGACCAGCAGTGAGGGACAGGTCCATTTCTCTGAATGCTTAGCAGAAGTGAAGCTAGTCTCCAGCTGGGTAAGGCAGGGGGACAGGAGAGAAGACTTTGTGGAGCAGGTAATTTTATTAGAAATTCTTATGTTTTACTGGTTCACAAGTGAGTTTCGTGAGCAGGATGCTGGCCCTGCAGTCAGTGGACTTGGGTCTGAGTACAGGTTCTGCTCTTCCTGGCCGTGGGACTCAGGACAACTTGCTCAGCTTTCTCATCTGTGCAAAGCAGCATGGCATTGTGGGGATGAGCATGGACTCTGGGGTCAGATTGCCTGGGTTCAAATCCTGCCACTCTGAGCTGGGTGCTGGTTGGCAAGTCATTTAAAGTAGTAGTGCTTCAGTTTCCATATCTATAAGATGGGGGTCATCATAGTATATTCCAACAAACAATTGTGAGAATGGAATGAGTTAATAAATGTGAAACACTTAGAACATTTAGAATAGTGCCTGTCACATAGCAAGTGCTCTATGTGCAGCTCATATTGTTGATGTTGTTAAAAGGGAGGATAATATTAGCGTTGCTGTAAAGATCCAGAATTAGGGGGATCAAAGCGTGGCACACAATAGGCTGTCAACACAAGAGAGCTGCTCTTCTTATTATTAATAAGTGCAGGTGAGCCTAGAATGAGAGGTGAAGAGAAGGGCATCCTGGGCAGTGTGAACAGTAAGCAAAGAGAGGAGGCAGGAATATGCAATCTGTGAGGCAGGAACAGAAAGTAATTTGGTTCGGATCCTTGGGAGAAATAGAATGAGTTCTTTCTGCTGGTTTCCCAGCTTCCTTGGGCTCTTAGAATCTGGTAAAAAAAAAGCCAGCTTCCCTCAGCACATCTCCGTGGCTTTCTTTTGCAATGTTTCTGAATACAG
Seq C2 exon
GCATCCTGGAGGGTCTGCTCCCTGTCTTTCCAAGGATGAGTCTCCAGGAGATGTTCCGCTTCCCTATGGGGCTCCTGCTTGGCTCTGTGCTCCTGGTGGCTTCGGCCCCAGCCACTCTGGAGCCTCCCGGCTGCAGCAACAAGGAGCAACAGGTCACTGTCAGCCACACCTACAAGATCGATGTGCCCAAGTCTGCCTTGGTTCAGGTTGACGCTGACCCTCAGCCCCTCAGTGACGATGGGGCTTCGCTCTTGGCCCTGGGGGAGGCCAGGGAGGAACAGAACATCATCTTCAGGCACAACATCCGCCTTCAGACGCCACAGAAGGACTGCGAGTTGGCAGGCAGTGTCCAGGACCTCCTGGCCCGGGTGAAGAAGCTGGAGGAAGAGATGGTGGAGATGAAGGAACAGTGTAGTGCCCAGCGCTGCTGCCAGGGAGTCACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000120332:ENST00000239462:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.124
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains