RnoINT0153907 @ rn6
Intron Retention
Gene
ENSRNOG00000002548 | Tnn
Description
tenascin N [Source:RGD Symbol;Acc:1306002]
Coordinates
chr13:77889051-77896697:-
Coord C1 exon
chr13:77896643-77896697
Coord A exon
chr13:77889493-77896642
Coord C2 exon
chr13:77889051-77889492
Length
7150 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
TGTTCTTTCTCTGGATCTAGGCC
3' ss Score
10.01
Exon sequences
Seq C1 exon
AGGACCAGCTCACCGGAGGCAGGAGGGTTGGGAGTGGTTCTCGACAGCCTCCCAG
Seq A exon
GTAAGAGTGCCAGCTCCTAAGGCTTTATCACTGATTGGGAGGGAGATGGCCACTGTGGGGAAGATTGTAGGCTGAAGTGCACTGTTGGAAATCTAGGCAAGGTAATACAGATGAAGTTCAAACTGTCTCCCAGGTCCTGTGAACCATGTCCTCATCTGGTCTTAGACTCTGCCTTCCCAAGCCAGGAGGCACCATCCCTTTACCTGCCAAGCACAGTGTGCAGGGCACCAGGTTCTACATGAAGCAGTGCCTTTTAGAGGAAGTGCTTTCTTTAATTCCATTTGTGCTCCTTCTTACAAAGACCTCTTCTCTCGGTGTAATTTCTTATGCGTGATAGCTAGTTCTCTTAAAACAGAGCTTTCATTTTGGAGGTGTTTAGTAAACTATATCTAACCTTTCTGTCTTTGAGATTTTTTTTTTGAAGATGATGCTTGCAGACTCGCCGGAGGGGTTCATTGGACTGTATGTGTATTAATCGTTACTGTAAGAGGAGACTTTCTTTCCCCCCACTTCTCATTTTCAATCACTTCAAGAGTGATGTGGGAGACTGGTTTTTGAAGATATGACTATTTATAATTTTGTAGGGTGGGAGAGGGCTGGGTGAAGAGGGAGGAGGGAGACAGGGTTTCATCCCTTAGGACCAGATTAGCTTATGTAAGCATTGACAGAATCATAACTTCAACATAAACATAATGGATTATCCACATCTGCGCAGGTGAGCCACAGCTCTGCCCTGTTGCAGACTCAGGGTGACGGTGTCAAGAGGAGGTAGCCAGCATCAACAGCAGGGACCGTTCCCTCAGAAACAAAGGAGAAAAAGGGGCTTCACTTTTATGCTATTCTGAATTCTTTTAATGTCTCCATGCACGTTGATTCCCAAAGCAAGGAAACTAGGGCAGATGATTTCCATCCCATCTTGTGGCTTCTGGCTTTCATTCTGGTGCCGTGCTGTGGTTTGATGTGTAGGGTAGACCAGCTCCTTTCTGCGATGATGCCTGAGGAAATTATACCCAGGCCCATGGAAACTCTGCCCCTTCCAGAGCCCTGGCTCCCATAGGATCTGGCTGCAGACATGAGGTCATGTTTAGGATCTCTTGGAGCATTCAGAACCACCAGTCTGCAAGCTGATGCTGTTGTGATAGCAGGTCTGGTTCCTGATGGTCAGCAGCTCGGCCTGGCTCCACCACAGACAACTCACACAGATGCCAACCAGCTGCTATCTAAATGTAAGCATAGCCAATGTGGGCAGAACAGTGCAAATTCCTGGAAATTAGCATTGGCTCTACGGCTTGACAGAAGGCTGGAACTCGAAAGTTGTTTCAGTCTGTGGAAAACCACATTAAACTAAAGAAAGGAATTGTAACTTTTCATTGTGAATCTCTCCTCACTTGAATTCACCCGAAGCAAGTTGCCCATCATGGCTATGGAGAATAGGAATAATTGTAGATCAGCTAACACTTAATCGCTTTGGGGACTTGGTTGGTAAAAGAAGGTCCCCAGATTTAGATTTCATGTCTATTTTATCTTCCTATTGTGAATGAGCCTGGTCCATGGAGGCTAACAAAAAACCTTTCTGTGAGAAATTAATTCATTCCCACGGGGATAAATGATCGTTTTTGCCTATTGTTCACAGACGTCTTTTAAAGCTCTTGACATAGAGACTGGTTTATGAGGAGTGTTTAGAAAATGGTAGCTACTACTGTCATCATTCACTGGACCCTTTGCAAAAGGCAGATTAAGATTTAGTCGATAAAAGAGAATGAGCCTGTCGAAGCTCCTGAAAAAGTGGTTGAGCTCCAGGGCTGAACTGGGTGCTTCATTCATTGTCTTTTTTGGTGGGTAGGCAACATATGTAGACAGAGGGGTTGTTGCATAAGGTGTGAGAACTCTTACAAACTCTTCCTCGGGACTCATTAGATGGACCCAGAGAACCAGGAGCACGGGAGCACACAGCCTGGGATGTGCTATTGTATAGAGTCACATCTTCATCCTTGACCTGTCTCTCATCCTGTATGGAATGCCTGTCCAGAGTCAGAGCGGAGGATGTTTGTTTGCATTGGGCTTAACTGGAGGCTGACCTAGCAGAATCCGGGCTGCCTCACATACTAGATTCTCTTGCAAACTGAAGAATGGGAAATGGGGGCATTGGTGGTCTGAGGTCTCACATCCAGGATGGGTTATGCCCCATGAGTTGTTCAGCTCTCTGAGAACTTATTTTCTAGACCAAGTACTCTAGTCACAAGACTCAGAACCACTCAGGGGTCAGGCTATAGACTGCTGGCAAACTGTGTTCAAGAAGAGTAAAGGAAGGAGTGAAGGTTGCCAATGACATTTATGACATCAGGACACCCTTAGCCACCTACTCCTTCATTTTTCTTCATTGTTCAATAAGGTCTACCCTATTATTTGGGCGAGAGAATATCTTCTTAGTGACTCTATTGGAAATCCACTGTAATACAGCTTTTCTAAGATCCAAAGCAGTACACTCATTTGCTTGTGGTTAACCGTTAGGCAGGATGAGGTCATGAAGGAACAGGGAAAGGTCTGAATTTAAGTACAAAGCTCTTAGCCAGTGGCTAGAAGCTGGCAACTACTCTATTTGATGTAAGTAGTATTTTTTTCCTGAGTCAGTGTGTGTCTTTCTTTGAAGAGAATGAGGTGACACAAAGGCCATACAGGCCTAATGAGAAGTCCTTGGGAACTGAGAAACATTCTCTCTTACTATGCCCTAATGGGTAGAGGTCTTGATATTCTCTGCTGTTTCCTGCCTCGTGGTAGGAAGTGGTAGGACCTTAGCTCCCTGTGAGGAAAACACAATTCATCTTCCCAAGTATCAGTTTGCCCTGGCCAAAGGCCAAGCAAGTCCAGGCTTCCGTTCCTGATTTATTAATGTTTTGTTGAATACCTGGTATGCCTTGGCTTTCCTTTCCTTTCAGAACCTCTCTCTTGAAGGAAATATAGCAGGAGAGAGGATATTTGGTGTTTTTCTTTCCACATCTACACTTTATACTGCAGAAAGACAGAGAATCCAGATGTGAGGAGTGGAATGGACCTGGTGTGTGATCCCAGCTCTGCTGCTTAACTAGTTGAATGCTCTGACCAAATTATTTACCATTTTGAGTACTTATGATCAACAATATTGTTGGTCGACAGTCATCATTTTGAGGATTAATTCAAGCTAATGGTTTTTTTTTTTTATTAACTTGAGTATTTCTTATATACATTTCAAGTGTTATTTTCCGGGCAAACATCCCCCTCCCCCCTCCCTTTCCTTATGGGTGTTCCCCTCCCAACCCTCCCCCCATTGCCGCCCTCCCCCCATAGTCTAGTTCACTGGGGGTTCAGTCTTAGCAGGACCCAGGGCTTCCCCTTCCACTGGTGCTCTTACTAGGATATTCATTGCTACCTATGGGGTCAGAGTCCAGGGTCAGTCCATGTATAGTCTTTAGGTAGTGGCTTAGTCCCTGGAAGCTCTGGTTGCTTGACATTGTTGTACTTTTGGGGTCTCGAGCCCCTTCAAGCTCTTCCAGTTCTTTCTCTGATTCCTTCAACGGGGGCCTATTCTCAGTTCAGTGGTTTGCTGCTGGCATTCGCCTCTGTATTTGCTGTATTCTGGCTGTGTCTCTCAGGAGCGATCTACATCCGGTTCCTGTAGGCCTGCACTTCTTTGCTTCGTCCATCTTCTCTAATTGGGTGGCTGTATATGTATGGGTCATATGTGGGGCAGGCTCTGAATGGGTGTTCCTTCAGTCTCTGTTTTAATCTTTGCCTCTCCCTTCCCTGCCAAGGGTATTCTTTTTCCTCATTTGAAGAAGGAGTGAAGCATTCACATTTTGATCATCCGTCTTGAGTTTCGTTTGTTCTAGGGATCTAGGGTAATTCAAGCATTTGGGCTAATAGCCACTTATCAATGAGTGCATACCATGTATGTCTTTCTGTGAATGGGTTCAAGCTAATGGTTTTTAATTGTTTGGCCCAGTACCTACTATCTGATAATCATACACCAATCTATTGTCCCTTATTATGTAACTCACAAACTACTTGGCCAAAGCTATGCTATGTGGCTAAGAAAACAGGAGGGACTTGTGTCATCCTAACCATTGCCATCCACGAGCTGATAGGCATTCTGGGCTGGGAACAGACTTGGCTAGAAATTAAAGCCACAGGAGTGGCGCAGCTACTGATAATAAAGAGCATAGTTCTGTGATGCTAGTGTACCTCAGTATACAGTAGATCCACGGGACCATGCATCTAGGTCATGCTGAGAACTAAATCCCGAGCAAAGTGTTTCTCGTGGTGGCCACAGTGGCAGCATTTACTCCTGTCACTGTCTCAGTCCTCCTCACCGCTTAGTGCTCCTCCTGGGATGATGCTTAGCATCAGTGAGACAGTAGTTCCTGGGGGACCCCTGGTTTCCATGGTTGCCTGTGTATAAATGCCCTTTGTCTCATGAATTCCTCCACCCACACCCCCCTCCATCAGGAGCTACGTCACAAAGAATCATCTTTATTCAGTAATGTATCATCTGTTGGTTTTCTTGGTGAAATATGGTGTGTCCCCTCCCGCCCCACAGAGAACCGTCTGTGGTGTGCCATGCATATTAATTCGGAGGATGAAGTCATACCTCCCTCACGCTGTTCAGCAAGGAGAGGCTCTCTCCTGCCACGTGTTGGAGCCAGAGCCAGCAGCTTCCCTTCTCGCTCACACTTCACAGCGCTAGATTGAGGATTTCCCCTGCTCGTCTTCTTTCGAGCAATCACTCTGCCCAGGAAAATCTGAGCTCAACATGTGCAATCGGAGAGGCCGTGATTAGCGAGGACATCTTGTTACAATTCAGGACAGGCAACACACAGGGCTCCTGCAGGGGCTTCTGGGCCTTCTCGTATTCCATGCTTCAAAAACAAACAATGTAAGACAGGGTTTTGGACAGCCTTGCTGTGGTTTATGGCAGGAGTTCCCCATTTTTTTTTTCATTTGTTAGGAACTTCTTCAGGAAAAAAAAAGAAAGAAAGAAAGGAAAAGAAAAAACCCAAACCATCTGCACTCCATTTAGGGCTCAGGAGGTGTGAGCACGCAGAGGGTGGCGCTGGATGGTAGGAGTGAGCAGAGAGGTTGACTGTGTTGGCTCTATTTTTGCCCGGAGGCAAAGTAGGTGCTCGAGCACCTACTGTCATTCTTCCCACAGTAGGTGCTCGAGCGGGCACAGCAGGTCCTAGACGTGAAGGTTCCATTGCTCGCCAGGTCCAGACCTGTGGCCTTGCACTTGGTAGTCAAGTAATCAGCAGCAAGTTGTTGTGGCCGCCGCCGCTCCTCCACTCCCAGCTTCAGAGTCAGGTGGACGATTTGTGTTTGGTTGCTTTATCACTGGGATAAACTTCTGAATGAATCTCTATTCTGTATTTCTATTCAGCACCTACCCCTCCAACTCATTTTGCTGGCTCTCCTGATTCCACCTTCTCACAGAGGTCTCAAGCAGAGACCCAGGCTTTCCTATTAAATCACTGTCATGAATTCAAATCCTTTTCTTGACAGAATCACTAAGTACTCAAGTGCACAGCCTTTCTTCTCCCCTGGCTCAGGTTGCCAGGATCCACATAGTGTGGATGTCTGTCATGGGTTTATGTGTACCTGGATGTTGTCCTTTCTCTTCTCTCAACTTGTACAACTGTTCTGGCTTTTTCAAGTTGCTTTCTGAGGCACAGCGTAATATGGGAAAAAGGACACCCCTCCACCAAGGCCCTATTATTAAATTGCCCTTGGCTAGTCAGGTAAGTCAGGTACCCATCTCTTTGCTTGCCACTCAATTCCATTCATCCTGGCCTCCCTAACTTTCCAAATGTTCTATAGACGCATACATGCTTGCCGCCAACTCATTAATGGATTCCCGACAGAAAGAGATGTCCCCTGACCATTCCATTTCATCTGGAGATGGTCCCAGTGCCTGAAATATAAAAAGAGCTTAGAAGAAAAGGACTAGTTTCACTGCTACTAATAACACATGCCTCAAACGACAGGCGGAGTAAGGACCAAGTAGCACACAGGGGTCCTATGAAGACTCCTCTCTTGCAACACAACTAAATGAATACAGAATCCCCAACACACTGAATAGCTAAGGTTTAAGGGTATGCATGTGCTTCTTGCCCCATCAGATCATTACACCCCGTACACATGTGTTGAATTACCACACTGTGCCCCACAAAGCAGTACAGATATGACAACAAAAGAGCACCAGCTTGGCGACATTCTGGCCAGTTGTGTGCGGTGACACATGCCTTCAGTACATCTGATCAAACGAGGACAGCACATGGGGGAGGCGTTTGCATCAGCACTGCATGTGGATGTAGACCAAGCACATGAGCACACTCCGGCCCCAGGGGTGAGAGAGGCAACAGAGAGCGCTTGAAGATAAGGTGATCTCCTTAGAAATTCTTGTTCTCCTGGGGGTTCGTACGCATGAATATTGAGCAGGAACTGAGCTGTCTCTGCACTTCCTGGCTCTGGCACTCAGGGCATCTTTCTCAACCCCTCCTTACTTGTGCACAAGAGCATGGTGGGATGGCGAGCAAGGATCTGAAAGTCAGATCGCTCAGCTTCAAATCCTCTCCCTGGGTTGGGGGTGTATGTGGCTTTAGTGGTAGAAACTTAGTGATAATAAGCAAGAGACCTGCTTCTAAGCATGGAGGGGGAAAGTGCAACACTCTTGGCTGTGTGCCTGTAAGTGTGCCTCAGTTTCCCTGTCTTTAAGTAGAGGTTAAAAACATCAGTATAGTTCGGCATGAGGGCACTGGCCTAGCACACGCAAGGTCAAGTTCAATTCTAAGACTCGTAATGGGGCTAAAAATGGAGCTAAAAATGTTGTGATGACCGAACCAGTTAGGGGATGTGAATGCTCAGGATAGTTCCTGTCTCAGAGCGAGCATTCTATGTGCAGCTATTTCTGACAATCTGAGACGTGATTGGTATTCAGGCACCTATAAACACCAGGGCCTAGGGAGACGGAAGGCTGACTTTGGTGAATGTGACTAGGAGTCCTTGCTGATACGTGAACAGGGTGTGGATTCTTAGAATCTGTTAAAAAAAAAAAAAAGAAAAAGTCAGTTCCTTTCAGCCAGCCCTCATAGGTTTCTTTGTGTTCTTTCTCTGGATCTAG
Seq C2 exon
GCCTCCTGGAGTGTCTGATCCCTTTCTCCAAGAATGGGTCTGTGGGGGATGCTTGCCTTCCCCCTGGGATTCCTGCTTGCTTCTGCGCTCCTGGTGGCTTCAGCCCCAGCCAACCCAGAGACTCCTGGCTGCAGCCACAAAGACCAACAGGTCACCGTTAGCCACACCTACAAGATTGATGTGCCCAAGTCTGCTCTGGTTCAAGTAGAGACGGACCCACAGTCACTCAGTGATGATGGGACATCACTCTTGGTTCCTGGGGAGGATGGGGAGGAGCAGAACATTATCTTCAGGCACAACATCCGTCTTCAGACACCGCAGAAGAACTGTGAGTTGGCCGACAGTGTCCAGGACCTGCTAGCCCGGGTGAAAAAGCTGGAGGAGGAGATGGCAGAGCTGAAGGAGCAGTGTAGTACCAGCCGCTGCTGCCAGGGAGCTGCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002548:ENSRNOT00000003452:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.212
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]