MmuINT0163291 @ mm10
Intron Retention
Gene
ENSMUSG00000026725 | Tnn
Description
tenascin N [Source:MGI Symbol;Acc:MGI:2665790]
Coordinates
chr1:160147447-160153580:-
Coord C1 exon
chr1:160153482-160153580
Coord A exon
chr1:160147889-160153481
Coord C2 exon
chr1:160147447-160147888
Length
5593 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
TTTTCCCCTTCTGGATCTAGGCC
3' ss Score
10.17
Exon sequences
Seq C1 exon
GAGAAGATATTGAGGGACGGATCGGCAACGAAGTCTCCAGTACCAGGACCAGCTCACAGGAGGCAGGGGGATTGGAAGTGGTGCCCAGCAGCCTCCCAG
Seq A exon
GTAAGAGTGCCAGCTCCTTGAGGCTTTATCATCGATTGGGAGGGGGACAGTCAGTGTGGGGAAGATTGTAGACTGACGTGCATTGTTGCAAATCTAGGCAAGGCAATATAGATTAAGTTCAAACTATCTCCCAGGGCCTGTGAATCATGTCCATAGCTGGTATCAGACTCTGCCCTCCCCAAGCCAGGAGACACCATCCCCTTACCTGCCAAGCTCAGTGCGTGGGGCACCAGATTCTACGCGGAGCAGTGCATTTTAGATGATGTGTTTTCTTTAAGTCTATTTGTGTTTCTTCTTACACAGACCTCTTCTCTCCGTGTAATCTCTTATGTGCTATAGCTCGTTGTTCTCTTAAAACAGAGCTTTCAATCTGGCTGTGTTTAGGAAGCTATGCCTAACTTTCCCCTCTTTGAGATTTTTGTGTGAACCGATGAAGATGATGCTTGCCGACTCCCTCGAAGGGGCTCATTGAGTTGTCTGTGTTTTAATCATTACATGACAGAGGAGACTTTCTCTTCCCCTACTGCACTATGGTTACCCTCACAGTGCCTCAAAGCGGGCATTTTCAATCACTTCAAGAGTGATGTGGGACACTGGTTTTTGAAGATCTGAGTTTTTATTTTAATTTTTGTAGGGTGGGAGAGGGCTGGGTGAAGAGGGTAGAGGGAGAGTCTTCACCCTCTAAGGACCAGATTAGCTTATATAAGCATTGACAGAATCATAACTTCAACATAGAAATATCAGATTATCCACATCTGTGCAGGTAAGCCATGGCTCTGCCCAGTTGCAGACTCAGGGTGATGGTGACAGTGTCAAGAGAAGACTCAAGAGGAGGGAGCGAGTATCAATACCAGGGTCCTTTCCCTCAGAAACAAAGGAGAAACAGGGCCTGACTCTCTCTCATGCTACTCTGAATTCTTTTAATGTCTTCAAAGCAAAGAAACTGGGCAGATGATTTCCATCCCATCTTGTGGCTTCTGGCTTTCACTCTGGTGCCGTGCTGTAGGGTAGACCAGCTCCTTCTGAGGAAATTATACCCAGGCCCATGGAAACTCTGCCCCTTCCAGAGCCCTGGCTCCCATAGGCTCTGGCTGCAGACATGAGGTCATAGTTTAGGTTCTGTTGGAGCATTTGGAACCACCAGTCTGCAAGCTGATGGTGTTGTGGTATCAGGCCTGGCTCCTGATGGTCAGCAGCTCGGCCTGGTTCCACCCCAGACGACTCAGGCAGATGCCAGCCAGCTGCCATCTAAATATGTGCATAGCCCATGTAGGCAGAACGGCGCAAATTCCTGGAAATTAGCATTGGCTCTTCAGCTTGATAGAAGGCTGGAACTCTAAAGTTGTTTCAGTGTGTGGAAAACCACATTAAACTGAAGGGAGAAATTGTAACTTCTCATTATGCATCTCTCCTCATTAGCACTCACCTGAAGCAAGTCCCCATCGTGGCTGTGGAGAATAGAAATAATTGTAGGTCAGCAAACACTTTATCATTTTGGGGGACTCGGTTGGTAAAAGAAGGTTCTCAAATTTAGATCTCGTGTCTATTTTATCTCCCCATTGTGGGTGAGCCTGGACTATGGAGGCTAACGGAAAACCTTTCTGTGAGAAATTAGTTCATTCCCACAGGGATAAATGATCATCTTTGCCTATTGTTCACAGACAGCTTTTAAGGCTCTTGACATAGAAACTGGTATATAAGGAGTGTTTAGAAAATGGTAGCTACTATTATCATCATTCACTGGGCCCTTTGCAAAAGGCAGATTAAGATTTAGTTGATAAAAGGAAATGAGCCTGTCGAAACTGCTGAGAAAGTAGTTGGGCCCCAGGGCTGAGCCTCATTCATTGTCCTTTCTAGTGGGTAGGCTACTTATATAGTCAGAGGGGTTGTTGCACAAGGTGTAAGAAGTCTTACAAACACTCCCTAGGAACTCATTCAATAGACCCAGTGGACTTGGAGCACAGGAGCACACAGCCTGGAATGTGCTGTCATGTGCTGTTTTATAGAGCCACATCTTCTTCATCCTCGACCTGTCTCACATCCTGTACAGAGCCACAACTAAGAATGTTTGTATGCATTTGGCTCAACTGGAGGGTGACCTAGAGGAAACAGTGCTGTCTCATATCCTAGATTCTCTTGCAAGCTGAAGAATGGGAAATGGGGACATTGGTTGTCTGAGATCTCACATCCAGGATGGGTCATGCCTCAGTAGGTTGTTTAGCTCCTTGAGAACTTGATTTTCTAGACCAAGTATTCTAGTCACAAGACTCAGAACCACTCAGGGGCCAGGCTGTAGCACACTGGCAAACTATGTTCAAGAAGAATAAAGGAAGGAGTGAAGGTGGCCAGTGATATTTGTGACATCAGGGCATCCTTAGCCACCTACTCTTTCTTTTTTCTTCATTGTTTACCGAGGTCTACCCTATTATTTGGGGAGAGAATATCTTCTTAGTGACTCTACTGGAAACCCACCGTAATACAGCTTTTCTAAGACCCAAAGCAGTACACTCATTTGCTTGTGGTTAACCATTAGGCAGGATGAGGTCATGAAGGAACAGAGAAAGGCCTGAATTTAAGTACAAAGCTCGTTGCCAGTGGCTAGAAGCTGGCAACTGCTCTATTTGAAGTAAGTAGCATTTTTTCCTGACTCAGTGTGTGTCTTTCTTTAGAGAAAATGAGGTGACACAAAGGCCATACAGCTCTAATGAGAAGTCCTTGTGAACTGAGAAACATTCTCTCCTCCTAAGGCTTGGTTGACATATGCCCTCATGGATAGAGGTCTTGGTAGTCTCTGCTGTTTCCTGCCTTGTGCTGGGAAGTGGTGGGACCTTAGCTTTCTGTGAGGAAAACACAATTCATCTTCCCAGGCATCAGCTTGCTCTGGCTGAAGGCCAGGCAAGTCCAGGCTTCCATTCCTGATTTATTAAGGTTTTGTTGAATACCTGGTATACCTTGGCTTTCCTTTCCTTTCAGAGCCTCTCTCTTGAAGGAAATATAGCAGGAAAGAGGATATTTGATGTTTTTCTTTCCACATCTACAGTTTATATTGCAGAAAGATGAAGAATCCAGACACAAGGAGTGGATAAGCCTGGTGTGTGATCCTAGTTTTGCTGTTTAACTAGTTGAATGCCCTGACCAAATTACCTAACATTTTGAGTACTTATGACAAATAATATTGTTGATTGACTGTCATCATTTTGAGGATTAATTGAAGCTAATTTTTTTACTTGTTTGGCCCAGTACCCACAATCTAATAATCACACACAAATCTATTGTCCCTTATTATGTAACTCACACACTATTTGGCCAAAGCTATGATGTGTAGCTAGAAAACAGGAGGGACCTGTGTCATCCTAGCCTCTACCATCCATGAGCTGACAGCATTCTGGGCAGGGAACAGACTTGGATTTTTACATGGTCGATTTTGGCTAGAAATTAACACCACAGGAGTGGCTGCAGCTATGAATAAGAAAGAGCATAGAACCCTGTGATGCTAGTGCATCTCAGGCAGATCCACAGGACCATCCATCTAGGTTGCACTGAGCAGTCAATCCAGAGCAAAGCCTTTCTCATGGTGGCCACAGTGGCAACAGTTATTACAGATACTGTCTCAGTCCTCCTCACCACTCAGTGCTCCTCCTCCTGCAATGAGGCACAGCTTTAGTGAGACAGTAGTTCCTGGAGGACCCCTGGTTTCCATGGTTTCCCGTGTATAAATGCCCTTTGCCTCACGAATTCCCCCAGTATCTCTCCCACTTTCCATCAGGAGCTTCGTCACAAAGAATCATCTTTATTCAGAAATGTCTCAACTGTTGTTTGTCTTGGGGAACCGTCTGTGGTGTGCCATGCATATTAATACAGAGGATGAAGTCATGCCTTCCTCATGCTGCTCAGCAAGGAGAGGCTGTCTCCTGCCACACACTGGAGCCAGAGCCAGCAGCTTCCCTTCTTACTCACACTTCACAGTGCTAGATAGATTGAGGATTTCCCCTGCTCGTCTTCTTTCTAGCAATCACTCTGCCCAGGAAAATCTGAGCTCAGCGTGTGCAATCTGAGAGGCTGCGATTAGCAAGGACATCTTGTTACAATTCGGGACGGGCGACACAGAGGGTTCCTTCAAGAGCTTCTGGGCCTTCTCATATTCCAGGCTTCAAAAGCAAACAATGTAAGACAGGGTTTTGGACAGCGCTTCTGTGGTTTATGGCAGGAGTTCCCCATTTTTTTTCATTTGTTAGGAAACTCCTTTGGGGGGAAAATCTGCATCCCATTTAGGGCTCAGGAGCAGTGAGCATGCGGACCGTGGCACTGGGTGGTAGGAGTGAGCAAAGAAGTTGACTTGGTTGGCTCTATTGTTGCCCAGAGGGGATTTGCGGTAGTACAGACCATGCCTTGCAATACCCACAGTAGGTGCTTGAGTGGGTGCAGCAGATCTCAGAAGCGAAGGCACTATTGCTCACTGAGTTAAAATCTGTGGCCTTGCACTTGGTAGTCACATAACCAGCAGCAAGTTGTTATGGTCGCCACTCCTTAGCTCCCAACTTCAGAGTCAAGCGGACAATTTGTTTTGTTTTATCACTAAGATAAACTTTTGAATGAATCTCTATTCCGTATTTCTATTCCACACCCACCTTCCAACTCCTTTTACTGGCTCCCCCATTCCACCTTCTCACTCACATCCCTGGCTTTCCTATTTAATCACTTTCCTGAACTCAAATCCTTTTTCTTGACAGAACTCCCATCTACTCCGGTGGACAGCCTTTCTTATTCCCTGGATCAGGTTGCTAGGAGCTGCATAATATGAATGTCTGTGATGGGTTTGTGTGTGCTTGGATGTAGTCCTTTCTCTTCTCTCAACTTCTATCACTGTTTTGGCGTTTCCAGGTTGCTTTCTGAGGTACAGTATTATACAGGGAAAAGGATACCCCTCTACCAAGGCCCTATCATTAAATTGCCTCTGGCTAGTCAGGTACCCATCTCTTTGCCTGCCACTCAATTCCATTCATTCTGGCCTCACCGACCTTCCAAACTTTGAGGAGATGAATGGATGCTTGCTACCCACTCATTAATGGAATCCTGGCAGTGAGAGAGGCCTCCTGACTGTCCTATTTCATCTGGAGAGGGTCCCGGTGCCTAAAACATAGAAAGAGTTTGGAAGAGAACTAGTTTCACTGCTATTAATAGCACATGCCTTAAAGGACAGCAGAGTAAGGACTGAGTAGCACACATGGGTCATATGAAGACCCCTCTTCTGCAACATAACTAAATGGATATGAAATCCCCATCACACAAAATAGCTAAGGTGTAATGATATGGAAGTGCTTCTTGCCCCCATTGGATCAATACACACTGCACACACGTGTTGAACTACTTACTACACTGTGCAACTGTTACTGTTGATCAAAGACATGGTTGATATTCAGGCTCCTATAAACACTAGGGACTAGGGAGATGAAAGGCTGGCTTAGGCAAGAGAATAGGAGCCCTTTTTGATACTGTGAACAGTGTGTGGATGCTTAGGATCTGTTAAGAGAGGGTAAGTTCCATTCAGCCAGCCCTCATGGCATTCTTGGTTGTTTTCCCCTTCTGGATCTAG
Seq C2 exon
GCCTCCTGGAGTGTCTGATCCCTTTCTCCAAGAATGGGTCTCTGGGGGATGCTCGCCTTCCCCCTGGGATTTCTGCTTGCTTCTGTGCTCCTGGTGGCTTCGGCCCCAGCCACTCCAGAGTCTCCCGGCTGCAGCAACAAAGAGCAACAGGTCACTGTTAGCCACACCTACAAGATTGACGTGCCCAAGTCTGCTCTGGTTCAAGTAGAGACCGACCCACAGTCACTCAGCGATGATGGGACATCACTCTTGGCTCCCGGGGAGGATGGGGAGGAGCAGAACATTATCTTCAGGCACAACATCCGTCTTCAGACACCGCAGAAGAATTGCGACCTGGCAGACAGTGTCCAGGACCTGCTAGCCCGGATGAAAAAGCTGGAGGAAGAGATGGCAGAGCTGAAGGAGCAGTGCAATACCAACCGCTGCTGCCAGGGGGCTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026725:ENSMUST00000039178:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.255
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types