GgaINT1028868 @ galGal4
Intron Retention
Gene
ENSGALG00000001389 | TTLL11
Description
tubulin tyrosine ligase-like family member 11 [Source:HGNC Symbol;Acc:HGNC:18113]
Coordinates
chr17:8654395-8659378:-
Coord C1 exon
chr17:8659061-8659378
Coord A exon
chr17:8654492-8659060
Coord C2 exon
chr17:8654395-8654491
Length
4569 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
TTCTCTCATCTCTTTTCCAGTTT
3' ss Score
9.92
Exon sequences
Seq C1 exon
ATGGAGCCGGCCGGGGCTCCGCCGCCGAGCTGCGCCCCGGCCCGGGAGGCGGAGGAACCTCCTGGGTCCCCGGCACTCCCCGCCGAACGACCGCGGGACGGCGAGCCCGCCCGGAAGGCGAGGGAAGAGGCGGCGTCGGCGGAACGGAGCCACGGTCGCGGCCCAGCCGGGCGGGCGGCGCGGGGCGGGGGGCGGCACGGGCCGGAGGAGCGGGGGGCCCGGACAGGCCGGCGGCCCCGCGTCACCGTGGACAGCTCTAAGGCCAAGACCTCGCTGGAGGCGATGAAGATCAGCCTGCGGCAGCTACAAAGGAGGGAG
Seq A exon
GTGAGTACGGCTCCGCGGGGCCCGGCGCGGCGGCGGCTGTCGGGGCTTCGCCCGGGGCCGGGCGGAATGCGGCCGCGCTCCGCCTCTGCTTTGCCCCGCGGCGCGTTTTGAGCGCGTGGTGCGCGAGGGGAGCGGTCCTGAAGAGCGGTGAGCGCAGCAGCCCGGTGAGAACAGCAGCCCGGTTCTGCCGTGCTGCTCAGCGCCTGTGGTAGTGCTGCCCTGGGGGTGCGGAGCTGCAGCACACCGCGCGTCGTGAAGCTCCTCAGTTAAATCCCGAATTTCTACTGCATGGCTTACTGCTGGCGTTGGGCTGTTCTTGGAGTGCAGAGATTCTTCCACTGCGGCTTTAAAAATAGTTCTGTAGGACCTGAGGCTGCTTCTGGGGGCATCTCCAGGAAGTCGTCAGAGCAGCGGAGTACATTTGGGGGGGGGGGAAGGCGGAGGGCACGGAGCAGAGATGGAATCTGGGCTGGAATGTCTCTGTGCAGCCGTGGCGTGCTGCCCTCGGGATGCCTGCCTTGTCCCGGCTCCTCCTGCAGCCTCACGAGGTACCGTGAGGTTCTGTGCACCTCGTGCTTTTCACAACTGTGTGGTGTGGGGCAGGCACTGCATTCCGTATTACCTCAAATCTCAGAGTTAAAAGCTACAAAACCTCACCTCCTGCTCCCGTTGCAGTGTGGTAATGGTATGTTGGAGGTGTGCAACTGGAAGTTGGCCTGTGGTGCGTCTGTCTGCAGCTCTGCTGCGTTCTGCCCAGCGGTGGCAGAGCAGGGAATTCCCCTGTCGTGGTTTTTGTGCTCTTGGCCAAGTTCTATCAGTACCATTCCAATGGGTGTTTTTAGGCATTGATTTAAGTCACCCTTGCAGCTTTGGTTGGTAGTGATCTGTATTTACCAGTTAATTTTGTCTTTCTCTTCTTGATGTTTTACTGTACTGCTATCTTGCCCCCTGCATTTTTCATGCATGGTTTCCTGTCCTCCAAACTGGCTTTGTTTCACATATTCTTGTTCTTCCTTTCTAAGCTACATTATCAGCATTCTCCTTCCCACTCTGCATCCCACAAAAGCAGTTTTGGCATCACTTAATCTTTTTGTGTTTGCTGTCTTCCTCAGCATCCTTTCTCCTCCATCTGACGGTTCTGTAAGTGTTTTCCATTTAGTCTGCTGCTTCTCATCTGGTCCATTCTTACTCTTAATTCTTTATTTGGTACTTTCTCTGTTGTGTGCTATTCACTGTACCATTGAGGTGGCCAATAACTCACCCTCCCCAAACACATCACTGAGATGCGTGCCTATAAAATGTTCAGCTGCTTATAGTAAAGCAGTCAATATGTATGAAGGTGGTATTATCTTTTGTCAATAAAGTATTTTCTCATATCAATGTACAAATCAAATCATCTTTCAGACCCCCCTACGCCAGAAGGTGGAATGACAAAGGAAAACTGTCAGTGATGTCTCGTAACTGGTGCTGTTTGCACTGTGGAAGAGAAATCCAAGGAAAACTCTTTGGGTCAAGTTGCATAATATTTTGAATTCTTTCCTTCTAAATGTTTAGAAATGTAGCGATGTGATACTCAATATCACTTACAGGCAGAGAGCCTGGGAAATAGTTTCAGTGTTGCAGCAGAACCAGTAGAGGGAACACATGCATTGTTTCTTGTATGACCAATACAAATAATGTGAAAAAAGGAGGCAGATATTAATGCATCTCTTGCAGTGCTGGCGTTGTAGGGGCTGTTCTTCACTCTGTTCCCTTCTGTCACACTTCCCCAGGTGATCTCTTTGGGCTTTGCCTTGGTGTATGTGGTCCTTCTCTCACACCACTCCTGTCACTGTTTCTCCCATTGCTGCTTTCGTTTTGTTTCTGTTCTCTCTGCTTGCTGCTGGCCCTGTTGTCTTCAGTATTTTCTCGGGCAGCAGATGTTTTACCAGGCTCCTTGAGGTGGACCCCTTTATAGCGATAACTTTTGTCTGATGGATAATGTCATGCCGTGTAATAAAGGCTTCTGAGGGCTTTTTTTTAATGTAAGTTGTACATTCTGACACCTCCTTTCTATAGGTGCCTTGATTTGCCAGGGGAGCTTTGGTTCCGTTACAGGCTGTTACTGCGAGGTGCTCCCTGTGCTTATGGCACTGTCCGTGTGTTAGTAGGGCACGTCAGTAATGGCACAAATGCCACCATTGGCCCAAATGGGGGAAAAAAAAAAAAGCAGGGGAAAAAAGGAGGGAGAGAGAGGAGCACTTTAAGCGTGGCTGATACCGATGAGGAGTTTATTCTGTGGCACTGATGTGTGAGGGAGAGGTGAGAGAGTCCAGGAATGCTCTGCCAGAAGCAATGAGAGCACTGAAACAAAAACCCCAAACAAAACTGCTTTCCAGCAGGGGGAATTCTGAGGAGGTTGAGCTGTTGGCCGGGACAGCCCCGTCCTGCAGCACGTGGGGACCTCCAGCAGGCACTGTGGGGCTCGGCGTGCGGGGAGTGCTCGGTACGACTGTCTGAGGCAGTGCGTCGTGTTCTTTAAATGAACGCGATGTGCCCAGTGATCTAACGGGCACCCTGAGTTTATTTTTCACTCAGTGAATTAGTTTTTGGGTAGCTGTGAGTTACCAGGAGAACAGAAGAAGCGGATGTCTCCAGCGTTGGTGTCGCAGCATTTGGTGTGTTGTTCGCCTTGCTGTTGGGTGGCTGCATGCAGGCAGGGGAATGCTTGGAAGTGTGGAGCCTGGGGAGGCTGACGGGGCGACGAGTCATCTACCCTGTCATTAAGTGTGATGGAACAGCGTGATGTGACCTGTGGGACAATTTAAATTATTGGCTTCCAATCCAGTGTAGAAATGGGCTGTCAGGGAACTCAGCTGTGATTGATGATGAATTGTGTCAAAGTTGTGAAAACGGTTCCGTTCCCTCTGTGGGCTCCTGTTGGCCCTCCCTGACAAATGCCCTCTGCCTCTGAGCAAAGGAGACCTCAGAAGGGCTCTGTGGGGCTGGGGGAGCAGCAGGCAGTGTGCAGGGGCAGATTGCAGCCATGGACACCCCACGTCCTCACATTGCTGCACGCCTCCCGGGCAGGGAGACCCGCTTTACCCAAATGCAATTAACTTTGCCTGACGAGCACTGCCTGCGTGGGTCAGCTGACCTGGCTGGTGGGTGCCTTTCCCAACACTATTCTTACGCAAACATACAGTGCAGACGATGAAGAATCCCTCCCGGCTTATTCAGGAGATGAATTAGATCCCAGCGTTGGATACATCCAAATAATCGTGGTTTGTTGGAAGTGGTGAGGCTGCTGTGCTGTCTGCATTGCAGGCTCTGGGCTAAGCGCGTTCCGCTGCCCGGCCCTGCTTACCCTTCATCTGCTGCAAAACCATTTCTGCGCGGTGTTTGTGAAGTGCTTTGATATGCTCAGCAGATGAAAGGTGTTATATAAATGCAAATTTTGTTCCTTTCGTTTCCATTCCGTGTAATAAATAAATAAATAGCGCAGGTTTTAGCGGGAAGGGCTGCGTGAGGCCTCGTGCTGCATCTGTATTCTGGGCGCACCTGGGGAGAGGTGAAGGCCACTGATTGTCTTCCAGAGCCGAACAGAATTAATTTTCACTTCTACAAAAACAGTTTTTGTGGGCTGAATAGTAATGAAAGCAGCGAAGAGCCCTCAGTCTCCGCTCTGTGGGGTATTTCAGCCCTGCGAGTACGGAAATAGTTGTGTGGCAGAAATAGGAAACGTGTTGCTAAGCGAGGTCAGTTTTTTTTCCAAAGGTGTTCACTGATAAAAAGTTTAGTTTTAATTAAAGTAGCAAATAGGGGAAGTAATTCACTCGGCAGCTTCCGTGTCCTGGAAGTGCATGGCCAGAGGTACAGCGTCACTGTCTGGGGGCAGAGGTGGGGCAGAGGCGGCCCAGTGCTGCCCAGGCACTGCCCCGGCTTTGGGGGCTGCTGCTTCTACCACCTGTGCTGAAGCGTTGTGTGAAAGGGAGGAGCTCAGCTGCTGTAATCTGTAACGTAGTTGAAATCGTTGCTTTAGTTCTGAATCTTTGAAAGCTCAACAAATGGTTTGTTGAATTGTGAGCTTTTCTTTTAACTACTGACTATTGCTGCCAGAAAGGAGTATACACGCATAAAAGGACACATAAATGGCTGCTATTGACTCCTGAAACTGGAAAGGAAAAAAGAAACCCAAGCAAGAGCATTATCAGTTTGTTTCCTTCCCAGTGGTAGCTGCTTGCTATTGCTGTGCCTTCACATTCTAGAAGTAAGAATTCCTAACTAATGTTATTCCCTGTAACAGTATTGTACATTACAAACAAGTCATGCCTTAAGTGTGCTCGATAGCCAGCTCTACATCTCTCACAGTGTGTGCTGCAGCTGTTTGTCCTTTCTCTACCTTTCCCGTAACATCCTCAACTTCAGCATCTTGAACTGATGAAATATTCTGTTTTGCAACCGAAATGCAGAGCATGTGTTCTTTTGTGCTGTTCTTGGACAGTTTGTGCTTAATGTGAGCATTTACAGAAATGAGACATGAAGGAGTGTTGCCAATTTGCTTCAGAACTTCTCTCATCTCTTTTCCAG
Seq C2 exon
TTTCCTTTTGGCAGACGCTTGCCGTGTGATATCTATTGGCACGGAGTATCGTTTCATGATAGCTACATATTCTCAGGTCAAGTCAACAAGTTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001389:ENSGALT00000002114:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.896 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0313310=TTL=PU(4.7=45.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]