GgaINT1031122 @ galGal4
Intron Retention
Gene
NA
Description
NA
Coordinates
chr7:20456644-20462353:+
Coord C1 exon
chr7:20456644-20456676
Coord A exon
chr7:20456677-20461924
Coord C2 exon
chr7:20461925-20462353
Length
5248 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
3' ss Seq
TTTTTTATGCTTACACATAGGCA
3' ss Score
7.18
Exon sequences
Seq C1 exon
ATGGTAACAACCTTTCGAGTGGCTCTTCTTCAG
Seq A exon
GTAAATCTATCTTTAAAATTCTACCTACTAATGCCCTTTTATTGTTTTGTTCTGTTTCTACTATTTCAATATCTCATTACATTTTACATAACTCTAGAAGAACGTTAAGTCAAAATATGGCTTTTGCCTCCACTTTCTGAATACTTATTTCTGCAAAACTATGGATATAACAACTGAACTATTAAATTTAGTATAATTATATGAGATATAAAATTCAAATAGAGTGATACTTCTCAGATTATTGCTAAAAGTTCTTATATGAAGAACATAAAATTTAAATGCATGAAAGGAAACACACTGTGGTATTTAGCAGTGATATATAAATTTGCTATTAAAACAAACAGTACTTCAGGCTTCCTGTCTCAGACAAAAACAACATTAACTACTCTATGAACCCTGGTAACTGAGATGAAGGGTTGAGTTTGAGAACTTGATTTAATGCATGAAATGAATTATTTCTCCTAGCTATCAGAACCACCATAGTCTCATATTATTTCTGCAATACTATGTTATTTGAATAATTATTTGCATATTATTTATATTGATACTTGCTATTTTACTTCATTGCAATTATCTTTTTCTTTTTCACTTTTATCTAATAAAGCCACAAGAAATAAAATGAGAGGATTAAAGTTACATTTTCACATCCTTTTTCACAAAAATCAAGCAATTATAAGCACACCATAATGAATAAGAGGTAACATAACCATATCTCTATCAACAAATGAGAAGACAGACAAGTTAAGATCTTTAGACATGAACTTATAGTATATAACCATTCTTTCTTTTCAGAGAGGACCTGAGAACACCTACATTCACTAGTCAGCCAGACACAGCATAGCCTTATGTGTAGTTAGAAATTTTATTCCCTGCACATCTTACAGCTTGAAAACCTATGTTTCCTTAGGCACCTCATAGGCATATTTGTAAACAGGAAGATCTTGTATCATATTATTCTCAACACTACGTTTTAGGAGAAATACAGCCTGAAGCAAGCAAGTGTGCTATCACCATCAAAAGATAAAATAACTTCCACACACAGAGGAACATAAAAATGACTGCTGATACTGACAGAGTTCAAAAGCAAGCTTAAATTTTAGAGAAAACTAAAAGAATAACTGAAATGCCAAAATTAAAGTAGACCACCCCAGACAATTAGAAGTGTCTGCAGTAGCTGAGAAATACAAATTTAAGCTTCTAAAGTTAATAATTGGATATGCCTTCCTTTTCCTGACTAAGAAAAAAGAGACCCAGAACATGAAGATTATTTAATGAGCAGAGTAAAAAAAAAAGATCCACTTATGTCTGCTTCTCTACATCTGGGGGAAAAGGAACTGAAAAAAAAACCTATAATTGGCTTTTGCTGTAATTCTCTGTCCTTAGGCTTGCTGAGCCCAGGCTGAAGGCAGCATCATGTGCCTCAGTGTTTCCATAGAATATATTCAAGTATGTGCTACTATTTTAGACTGCCAATGTTTAGGAACTCCATTTCTCAAGAGCAGTTGATTCCTTCAGCCTGTTGTGTTAGTTATTTGATAAAGTTTTCCAAACCTTTGAGCTGAAATTCAGTAATTGCCCATGTATGTATTGCTGACAATATATATCCTGAAAATTCCTTGATACCAGTCACTCAGCTATCAAAAAAAAAAATCTTTCAAGAAAGAGCTGACTAGTGCTCCCTTTGTGAAAGTAGTTTTGTTCATTGTGCATTGACCTCCTTTGCTTTGTTTTGGGAAAGTCTAAATCTGTGTTCATTGGGCAGGGAATTTTTAATTCATGACTGAAATTTGCAGAAGTTTTTAGACCAAGTTTCCTTGTCTTAAGTCTGTAGCTCTTAAGTCTGGAGCTGTGACCCAGACTTAACTGCTTTCTTCAAATGTTTTTAACAATCCACAGTTATATAAATCTGACTCAATACAGTATTAAGAATTTGGCACTCTAGTTTTCATCTCCAATAAAACAAAGATTTTCATGTAACATCTGTATATTCATAGTAGACATCTCATCACATCTCAGAAATCTTTCAGTACTACTGTCCAAGATAAATCTACTCAGACATCATATCTACAGTGCTAGTGTTGTCTACTTTTTTCAAAAGATTTCACCCTATATACACTATGCCAGGAAGCCTCCATTGAGACTTCTGGTCTATACCGGGACATTAGGCCTCGGGCCATGAATTTTCTTTCTTGACAATTTGTATTACTACTGAGCTAAGCAATGAAGTGTGATGTAAATTAGACAAATTTTGAAGGGGCTTTCTGATAGTTTAGCCACAGTACTGCAGGAGAGCACTGAATGTTCAACACATATAGCTCATTATCTCTAAACTGAATAGTATCCCCCAAAAGATATTGAAGTTAAAAAGAATAGAGGGATTTTAATTTGAGATCATCTATTACAGTTTGTAGAATAATAGGAAAAAGTTACTCATTTAAGTTTTTAATTTCATGCCCAAGAATCTCAGCAAGAAGCAGCATTCTCACAGCATATTCTTTCCAGCTCGACTGCAGTTAGACAGCTGAATCAGTAATGCAGTATAACATGGTCATATTAACTTGGTGAAGCAGAAAAGACCATCTGCACCACCATGAATGTAACTAGATCAGAGTGCCAGCAAAAACAACCTTTAACAGCAGCTAAAGCCATAAAATCTTATGAATGGAATTTTTAAGGTTAATGTAATTGATTAGAGAAGTTACAGTATTTGTTTCACTGTTTACATAATAAGCTTCCAAAATTGATGAGATACTTTCCAACTTATTATTTGCACATTCAAAATAAAATATTTTTAATGTACTTCACTGATTTCAACTGTTAACAATTTAAGTGTAGTTAGTAAATCAGAAGAAATGCGCATGCTTCTGAGGTCTATTCTACCAAATATCAACAGGTAGATTGAAAATTAGCACTTGTAGGTGTTGTCAATAATCTACTGTACTGTTGTTAGTATATTCATTAGAGTAATAGATTCAATACTAAACATTGGGAATAAAGTTTTTTTTTTTAAAGAAGACCCCTCACTGAAATTACAAAACAAATAAAAGGGAGAATGTTACATGGAATCACATTTTAACATAGGGAAAGAAATATCAAAATGAATGACCAGATTTCTTGAGATGTAGAGTCTCACAGAGTCTTTATTGTTAAAGACATTTTCAATCCTTTGGAGAAAGAAGAAGAGAATGGCAAGGTGAGAGTTTGCTGATGTCATAAAATTAATAATATGATCTGAGATTTGCAGACACATCCAATAGTACTGAAAGACCAAGGAATAAAACAGCAAATGACATTTCTTACAGACACAAAAATAGTCTGTAAGTCACTCTGCTAATCTCCAAGGATGGGAGTAGCTCATGCCACTGCCAAAAGTTACTGTATTAGAAATGAAAAGGAACTAAGTGTAAAAAGGGTGATCAGATACACACAAAAATTTTAATATAGCTTAGTTATACTTGCATTTATCAAAACAGATACATAGAGAAACTACCACCTTTGTCAACTTGCTTGCTGTAAATCGATTGCAAGAAGTGTTTTTTCATGGTTATAGATAAATTATGAGAATGTTTGATATAGCATACTTTCCAGAGCAAAGTAGAATTCTATTTCAAAAGCACTGAGACAAATTCACAGAAGAAAGTTGCATCAAACATTGATGATCTGGGCTCAAAACAATCTGTGGATCAAAAGATTTCTCGACTACCAACATCCAGAAACTGAATAAACAAACTAGAAGAAAAAAATTCACAACTGAGTTGTTCTTAAATTCCTTCTCCACTCATCCACATTCGGAAACTATCAGAGTTCCTACACTACAAATCCTACCTCCTCAGTGGCCTTCAGTATAGCAACTTCAGGCTTTATACAGCTTTTCTTTTAAGAGCCAGGCATTCTCACTTTCATTCACTCAGAATTCAAGTTAAATTCAATAATATAGATATAGCACACTCTAAAATGTTAAATGACCAAGTTGTGATCAACTGTGTTGTATTAACTTATGTACAGGCATCAGTAAGTGATTATCTCAAAACATTTCAGTAAGAAGTGAAAAAAATCTCAGTGCTAAATATTAATGAATATTAGCTAGCTTCAAAGAGTGGTAAAACTAACCGAATAGAATGAGATCTTATCCCAACAGAATTTGTTATTAGCTTCTTAATAAGAAGGAACAGCAAGACAGTTTGTGATGTTCTCCAATAAAGCATGCTCATAGTGGAAAACAATCACATTGCAGAATGATAAGTGACAAAAAGCAATTAGTTAATGTTGATGAAATGACATCTGATCCATTCTGTTACTTTGTTTTGCTACTATTTCTTTATAATTTCTTCCATATTTTACTGTGTTTTCTGTGCATTAGAAGTCCTAGTGCCTCCATCTGAGTTATATTAAGCAGTGTTTGAATATTCACTGCCTGGATTTGTTTGGTTGTTTATTCTTTAGGGGAATGATCTAAGAAAACTTCATATTTCTCCCCCTGTATTTTCTCAACCTATAGCATTTTATTTGAATTTTACAATTACTCTCAACTACCACTATTTCTTACTGCCACAAAATATTATTCACTTTACATGCACTCAGCATAGTCTACCACATCATTTAATGTACCAAGCCCAACTAAGCCTACATCCACAAAAAAAAGCACAAAAATGCATGTACTGTATGAGTGCAACAGAGGGTTGGAAGCTGTGTCATTCAAAGTAAGTATTTCATTTAAATATAAAATATAGGTGTTGAAAACAATAACAACAAAACTAATGCACAACTTATTTTTCATAAGAATTAGCCCTGGTAACTTCATGTTACATTTGTAGCCAATGAATCAATAAATCAGCATCACAGTTTTAAACAAGGAATTCCACAAGTAATAAGATCCACAAATACCTATTTCAGGATACAGCTACAAAGCAAAGTAGTTCAGTGCATTACAGCAGCCTTATACAGTTACAGCAGATTTAAGCCAGAAAGAACCATCAGAATAGATAACCATAGAGTCAACGCTTATTCATTTTCCAGGCTCATTAGCTTAGATTTAACTGAAATATGAAGTTCTCTAACAGGACTTTAACCTGGAATTTAACAGTCCTCCATATTATTTACACATCCAATGCAAAACATTATTAAGAATGGGTCAATTATTTATAGCTGTTATTACACAATACGTTTGTGTGGAAAAAATAAGCAGATTTTCATGAAATGAAACTAACACAATCTTTTCTTTGTTTTTTTTTTTTATGCTTACACATAG
Seq C2 exon
GCAAACTTTTTGGGTTCCGGTTACCTGGATTGAGACTTTTAACATATAGAAAACAGTCCTTACCACAAGAGGATCCCGATGCAGTGATAATCGACTCATCTAAGCACAGTGATGACTCAGTGGCTATGAAGCACTTTAAATCACCTACAAAAGAAAGTTGTAGTCCTTCAGAAGTGGATGACACAAAAGCACTGATTCAACCAAGTGAAGGTTCACCTTTGGTTAATATATCAGGACCTCTCGACCATTCATCACCTAAGCAGCAATGGGACAGACTTTACCCAGACATGATACAGACAAGCAATCCACTAACCCATTCCAGATCAAAGGAAAGCATATGTAGCATACGGAGAGCATCTTCAGTACATGACATAGAAGGATTTAACGTCCACCCGAAGAACATTTTTAGGGACCGTCATGCAAGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011082:ENSGALT00000018056:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]