GgaINT1031125 @ galGal4
Intron Retention
Gene
NA
Description
NA
Coordinates
chr8:2717164-2718128:+
Coord C1 exon
chr8:2717164-2717220
Coord A exon
chr8:2717221-2718079
Coord C2 exon
chr8:2718080-2718128
Length
859 bp
Sequences
Splice sites
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
3' ss Seq
TCTTGTGTTGCACTGAACAGGTC
3' ss Score
7.47
Exon sequences
Seq C1 exon
TAAGGAATTAAACCGGGATTGTTACAATCAAAATTACACACCCGGAACAATTGATTG
Seq A exon
GTGAGTTCCTCATTTAAAAAAGCAAACAAAAATCCACATAATTGTGTGAGGGAGGCTGGGACAGGAAGACAAATCAATTCTCTCTGGAATGGTGATATTTTATTATATCATGATGACATTTCTATAACTCTCCATCAGTTACTTTCAACTTCATTAATATTCAAAACAGCCTTCTAATTATTAATCTGATTATGTAACAGATTTGCTAGATTGCATGCTGTTGTAAGATCTGAATTCCCATAATGTCTATATATCATGCTGAAAACAAACAAACAAAAAAAATGGACACCCTTATTATTTAGAAAAAAAAATATGACTAGCAGTAAGTAACAGTAATGTACTGTGCCACTGAGGGTACCATATTCTAGTAGCACTCTATCAAGTATCATTGTGTTTAGTAAATACTAAAACATTTCCAAGATATGTTGTTCTTATTATGTAGATGCCATGTATACCATTACTCAGAAAAAAAAAAAAACCAAAAACAAAAACAAAAGAACTGTCAAGCTTCTTTTTCCTGCTACAGATAATGGTTCCTCTGCATCTCTAGAATCAAAACCTCAAACTGCTTTAGTCTTTCTAGAATCATGGGGGATGATTCTAGCAGCCATCGAAGCTAATAAAACATTTTGGTGTCACCAGGTGTTGGATTACTACCACGTGAATTTAGTAATTGGCTCTATAATAGAAAGAAAAACTGCTAATACTCAGTAGACAGCTACTGATTTTAAATCTTTACTACTTATTTTTTTAAATATGAGGCTGCTGTAATTTCCATTGATATGTAAAATTTCTTTATGTTTTTTTTTTCTTTTGATTTATTTAAATTCCATATTTGTTCTTGTGTTGCACTGAACAG
Seq C2 exon
GTCTCCTATTATTTGGGTGAATCGAAGTTTGCCTCTATGGGGATTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002451:ENSGALT00000003864:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]