GgaINT1031161 @ galGal4
Intron Retention
Gene
NA
Description
NA
Coordinates
chr7:36191594-36195254:+
Coord C1 exon
chr7:36191594-36191752
Coord A exon
chr7:36191753-36195082
Coord C2 exon
chr7:36195083-36195254
Length
3330 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGA
5' ss Score
7.54
3' ss Seq
AATTTTTCTTTTCATTTCAGTCT
3' ss Score
8.09
Exon sequences
Seq C1 exon
GAGTCTGATGTATTGAGTAGTTCTGACAGAGACTGGGGAATTGGAGAAAGAGAGACTCATGAAAATCCTTGGAAGCTTACAACATCCTCTTCGACTCACTACTCAGGGACACTTGATCACCCACGGTCTGGAAGATTTTTGGGAACCAGAAACAGACTG
Seq A exon
GTGAGAATTTTTAATGTATAATATAACTTACTAAAAGACAATCATAGAATCTTAGAATGGCCTGAGTTGAAAAGGACCACAGTGCTCATCCAGTTTCAACCCCCTGCTACGTGCAGGGTCACCAACCACCAGACAGGGTTGCCCAGAGCCACATCCAGCCTGGCCTTGAATGCCTCCAGGGATGGGGCATCCACAACCTCCCTGGACAACCTGTTCAGTGCGTCACCACCCTCTGGGTGAAAAACTTCCTCCTAAACCATTCTCCCTTGTCCTATCACTGTCCACCCTTGTAAACAGCCGTTACAGCAGGGCTTTACTGTAACCATCTCAATCTAAAAATCTGCCAGCGGAAGCTCGCTGTAATGTTTCCAGATGAATACAGTTTATCAAATGAAAATGGGAGGGAAAACAAGAAGATGGCATTGTTAAGGAATTATTCAAAGGTGAAAATAGTTATGTATATTAATTTTTACTTTTAGTTAAGAAATAAAGTGAGAGTGGCTCATTTGATGTGTCCATTTAAAAAGAAAAGAAAGAGTCATGATTAGAATGTCATAAATGTTATAGTCAGACAAATGACAAAATGAATATTATTTATACTTGTTTTGTTGATTATTTCTAGCGTGTAGTGACTTTTGATGTTAGTAGCTTTGTGACTTGATCAAGTTCATAGTTTTGGAGATCTGCTTTAGAAGACTTCATGGTTCCTTATATGTAACATAAGGCTTTCTTAAATGCTGCTTACTGAAAGAAAATAGAGGCTGAACTCTCACATTACTGAGGTCTGGGACTTGGACCTAAACAACTTGTCTTAACTGGCATTTAAACTGTGCCTTAACAGTTCCACAATTCGAGTAGTTTGCTTCTTTGAAGTCTTTATGCACAGCAGAGTCAAAATAGAGCACTTGCAGTTTCAGCAGAAATATTAGGAAGTAGAGTAGTTTGGGTGGGAGGGATCTTTAGAGATTACAGAACCATAAAATGGTTTGGGTTGGAAGACGTTTAAGATCATCTAGTTCCAACCCCCCTACTATAGGCAGCTGCACCTTCCCACTAGATCATGTTGCTCACAGCCCCATCCAGCCTGCCTTTGATTGTTTCCAGGGAGGGGGCATTCACAATCTCACTGGGCAACCTGTTCCAGTGTCTCACCACCCTCACAGTAAAGAGTTTCTTCCTGACATCTAGTCTAAGTCTACCCTCTTCCAGTTTAAAACCATTTCCCTTTGTCCTATCTACCTGCCTGTCACAGAGACTTCCTGTCACTATGACACTGTGACACTTCCCTTATAAGGAGTCCCTCCCCAGCTTTCCTGCAGGCCCCTTCAGGTACTGGTAAGCAGCTATAAGGTCTCCTTTGAGCCTTCTTTTCTCCAGGCTGGTGAGCCCCAGCTCTCCCAGCCTGTCCCCATAGGGGAGGTCCTCCAGCCCTGTGATCATCTTTGTGGCCCTCTGGACCTGCTCCAGCAGCTCCATGTCCTTGTGTTGGATGCTCTAGAATTGGACGCAGTACTTCACGTGGGTTCTCATGAGAGCAGAGCAGAGGGGCAGAATCGCTTCCCTCGCCCTGCTGGTCACACTTCTCTTGATGCAACTGACAATACAGTTGGCCTTCTGGGCTACAAGGGAACATTGTCGGCTCATGTTGAATCTTTCATCAACTGACACCCCTAAATCTTTCTCCTCAGGGCTGCTTTCAAGCTATTCTCCGCCCAACCTATATCTGTGCGTGGCATTGCCCCAACCCAGGTGCAGGTCTTTGCACTTGGCCTTGTTGAACTTCATGAGGTTGGCATGGATCCACTTCTCAAGTCTGTCCAGGTCCCTCTGGATGGCATCCCTTCCGCCTGGTGTGTCATCATCTAGTCCAACTGCCTGACTACTGCATGCTTCCACATGGGAAAAAGAAAGAACTATGAATACACTGGGGGTTGGAGGGGAGTGGGAGACAGTGAACAAATGAAAGTTCTTCTTGCTTTAGAACTGAGAGAACAAGTGGGTACCTGAGGGTGCTTCTTTCCTAAATAGGTGTCTTTTTATCTTACTGTGACTTAAAAGGTAAAAGCACTTTCAGAAAAGTTAGGTAGGTGGAAAAGCTTTGTGGGATACTTCAGAAGCAATCGTAGTAAATGGCTGTATATACACTTGGAGCAACTGATCGTAGTTGGCCTATGTATCTATTTAAGCTGGTGCTCTAGGCTTTTCAAAAGGAGGTTTTCTCCTTTTAAGATAAATTTTTGTCTTAAATTGTTCTAACGCAAGTGAACTCTGCATAAGACTCCTGGACTTCAACTTGTAAAATAGTAAGTGACTAAAAGATAAACAATATGTTAAACTGATGGTTTGAGGGGGCATCAAACTGTTGTAAGACTTGGTTTGTGATGTTAGCTTCTGTGTCCGACCATCTGTCTTTTTATGATGAGAAAGATGAATAGTTCTTCGTTGTAAAAAGTGAAAAGCAGTAGCATTACTCTTCATTTAAAAAAAAATAAAACAGAACAGTATAATTTATTTGGTCAATTAAGAAGCTCAGTTTCATATTATTTCTGGGAGAGGGACAAACAGCCTGATGAAGTTAAAGTTTTTGGTATTTAAAAATCAATATTTAGCTACATGTAATCAGATAATAGCTTTCCAGGCTAACCTTTTTTTTTTTTTTTTTTTTCCTTCTCGGTATTAGTAGCACAATGGAATATATAAAATACTGCAAAAAATTTATACTTTTACAACTCTTTCAGTTGTACTTGAGCTTAATGTAATCAAACTATGTCTCAACTAAATGGCTTACTAGAATCTAGAGCTGCCGCTTAGCTAAGTATGTTTTAAGTTGGCAAAAGATAAGCAGAGTTTGTTAAACTAGAATAATTTTTGAACTACAAAATTATGCCTTCTCCTCTGGAGACATTCAAAACCTGCCTGGACATGTTCCTGTGTGACCTGATTCAGGTGTTCTTGCTCTTGCAGGGGGATTGGACTAGATGATGTTTCAAGGTCCCTTCCAGTCCCTGACATTCTGTGATTCTGCTTGCCTTGAGATCTGTAAATCTATGTTTGAACATGGCTATAGTGTTTTATAAGTCAGGACTACCTTTTAATGTGAAAAAAAAAATGCTGATTTTAATAGGAATCAACGTTTGATGGTAGAGCTGCACAAGCATAGGTCATATAATACGGTTAAATAGAAAGACTGAATCTTCAAGTTTTTTTTTTTTTTTACTAGTTTTGTGAATCTTCTGTTATGTGCACTGTTTTTCAGTATCTTAGGCTATTGGAAGTACACCTGAAATACTGTATCCATAATGCTTCTTTCAATTTTTCTTTTCATTTCAG
Seq C2 exon
TCTACATCTTCCTCCTCTCATTTTACATCTGGGTGTTATGATGATTCTGAAAGAACTCAGGGAGCATATTCAAGACTGCATAGCCAGCAGCAAGATAGTGATTCAAAGCGACCTAAGCTGTCTTGTACATCTACCTCTTCTGTGAGAAGTAATGGCTTGACTGCCTTTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012584:ENSGALT00000020547:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]