MmuINT0095812 @ mm10
Intron Retention
Gene
ENSMUSG00000026977 | March7
Description
membrane-associated ring finger (C3HC4) 7 [Source:MGI Symbol;Acc:MGI:1931053]
Coordinates
chr2:60228918-60229879:+
Coord C1 exon
chr2:60228918-60229082
Coord A exon
chr2:60229083-60229683
Coord C2 exon
chr2:60229684-60229879
Length
601 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGTA
5' ss Score
5.89
3' ss Seq
TTGTTTAACTTTTTATGCAGTCT
3' ss Score
5.77
Exon sequences
Seq C1 exon
GAAACCTTAAGAATGGAGTCTAAACCTTCCAGGATTCCAAGAAGAATTTCTGTTCAACCCTCTGGCTCTTTAAGCACTAGGATGGTGTCTGGAAACAGAGGAACCAGTTTAAATGATTCATATCATTCTAGAGACTCCTCCTTTAGACTGGATTCTGAATATCAG
Seq A exon
GTAGTATTTTAACTTGTATATATATATATATATATATGGTCAAATTAAAAAAAACTGTGGGTATATTTATTAGATTTTTTTTTAAAGTAGCTGCACCTGAGACATCCTACAATCTTAAATAGTTAAATAGAAACAAAATAAATAGCTAACGATTTTCAGACTTTGGAGACTTCACAGTTGTGGATAAGAGATTATAGTCTTGTATAAAATAATTTCTAAAATTCAAAAGCTGCATTTAGAAACAAATATTAAAGTAAACTATTTTTACTTTAATACCGAAGTGGTAGGTATCCTCTCTCTTCCAGTCAGAATACAGAATACTCATCTGACTTTGTGTATGCACACGGCAGCGGGTAAAGTAAGAGTATAGCTGGTACTATCCTGCTGTAATGTTAGGTGACTAATCGGTCTGTCAAGATTCCTCTCAGTGATGGTGAGTACCTGGGTGCCGAGAGCCTGGGTTCATCCCCAGCACAGCTCTCTCACCTGCCATTTAGGAAGCTGCATCACCAACAGCCTTCAGCTTGATTGTTTGCTTGTTACTATTTTCTTGTAATTTCTAAGAATTAACAGCAGTTCCTTTGTTTAACTTTTTATGCAG
Seq C2 exon
TCTGCATCAGCATCAGCGTGTGCATCACCATGTCAGCCTGCCTGGTACAGTGAGTCTGAGATACCTCAGGGAGCGCGGGCACGAGCACAGACCCAGCAGCGGGATCATGACTCAAAGAGACCCAAGCTTTCCTGTACAAACTGTGCATCTACCTCAGCTGGGAGGAACGGTGGGAGTGGGTTAAATACAGTGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026977:ENSMUST00000102748:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.922 A=NA C2=0.758
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGTCTAAACCTTCCAGGA
R:
CTGTATTTAACCCACTCCCACCG
Band lengths:
342-943
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types