RnoINT0089726 @ rn6
Intron Retention
Gene
ENSRNOG00000006241 | March7
Description
membrane associated ring-CH-type finger 7 [Source:RGD Symbol;Acc:1308993]
Coordinates
chr3:46304888-46305807:+
Coord C1 exon
chr3:46304888-46305052
Coord A exon
chr3:46305053-46305611
Coord C2 exon
chr3:46305612-46305807
Length
559 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGTA
5' ss Score
5.89
3' ss Seq
CTTTTAATTTCTTTTTATAGTCT
3' ss Score
8.74
Exon sequences
Seq C1 exon
GAAACCTTAAGAATGGAGTCTAAACCTTCCAGGATTCCAAGAAGAATTTCTGTTCAACCCTCTGGCTCTTTAAGTGCTAGGATGGTATCTGGAAACCGAGGAACCAGTTTAAATGATTCCTATCATTCTAGAGACTCTTCCTTTAGACTGGATTCTGAATATCAG
Seq A exon
GTAGTATTTTAACTTGAATATATGTACATTCAAATTCAAAAAGCTGTGGGTACATTTATTAGGTTTGTTTTTTTTTTTTTTAAATAGCCGCACCTGAAGCATCCTACGATCTTAAATTGTTAAAATAGAAACAAAATAAATAGCTAACGATTTTCAGGATTTGGAGACTTCAGAATTGTGGATAAAAGAATGTAGTCTTGTATAAAATATTTTCTAAAATTCAAAACTGCATTTGGAAAAAAATACTAGAGTAAACTTTCTTTACTTTAATACCGAAGTGGTGAGTATCCTCCTCCAATCAGTATACATACTAATTTGACTTTGCATATGCACAAAGCAGTGGGTAAAATAAGAATACAGCTAGTAATACCCTGCTTCTAATGTTAGGTGATTAATCAGTCTGTCTCAGTCGTGCATACCTAGGTTCCGAGAGACTGTAATCCCCAGCGCAGCCACCTTACCTGCCACCAGCCTTTAACCTGATTGTTTAAAGATTACTATCTTCTCTGAAATATCTTAAGAAATAGCAACAGTTATTCCTTTTAATTTCTTTTTATAG
Seq C2 exon
TCTGCCTCAGCGTCAGCATCTGCATCACCATATCAGTCTACTTGGTACAGTGAGTCTGAGATAACTCAGGGAGCACGGTCACGGTCACAAAACCAGCAAAGGGATCATGATTCAAAAAGACCTAAACTTTCTTGTACAAACTGTACGTCTACCTCAGCTGGGAGAAATATTGGAAGTGGTTTAAATACACTGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006241:ENSRNOT00000008464:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.860
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGTCTAAACCTTCCAGGA
R:
TGACAGTGTATTTAAACCACTTCCA
Band lengths:
347-906
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]