GgaINT1031162 @ galGal4
Intron Retention
Gene
NA
Description
NA
Coordinates
chr9:22856305-22857499:-
Coord C1 exon
chr9:22857446-22857499
Coord A exon
chr9:22856459-22857445
Coord C2 exon
chr9:22856305-22856458
Length
987 bp
Sequences
Splice sites
5' ss Seq
CTGGTACTA
5' ss Score
3.1
3' ss Seq
TATGCCCATCCACCATTCAGGGA
3' ss Score
7.15
Exon sequences
Seq C1 exon
ACTCAGTCGGCTGTCAAATCACTGAAGCGACCCCTCGAGGCAACCTTTGACCTG
Seq A exon
GTACTATGACCTTTCACCTTTTAGCTTGGCATGTAGCTGTATTGTAGAGTCGAGTTGGGGGTTAACGTGCAGAATCCAAAAGCTCTCGGATCCCTCCCTCCCTGCCTGACGGGCGTGGGGGTGGTGGGACCAGCCCCCATGGCAACCTTAGCCTGTGCAGGCCCTGCCGCCCCCTCCCCTCCCATCCCATCCCCATCCCCATTCCCATTCCCATCCCCATCCCATCCCCATTCCCATTTCTATCCCATCTCATCCCTCTCATCCCCATCCCTCCCCTCCAGTCCCCATCCCCATTTCTATCCCATCCCATCTCTCTCATCCCCTCTCCTCCAATCCCCATCCCATCCCCTCCCTTCCCCATCCTATCCTTCCCATTGCTGTCCCATCCCAGTCCCATCCCCGTCCCATCCCTGGGAGCCGCGAGGGCCGGGCCCGGTGCAGGGCGCGTTGGCATGGCTTGGTGGCGCTGCGGCGTGGAGGCGGCCGGGGGTGCCGGCATGCGGCGAGCTCTGCATGCCAGGCAGGCGCTGGGGCCGGGAGTGGGGTAGTGCCGGCAGCGCCGCGCCGCGCTGTGCCGATTAACATCGCTTCTACGTGTTGATCCTCATGGAGCTCTCAGCGCTGCTTCCCCCGCCCGATAGCCTTGCTCCCCGCCCGAGCCCTGAAGCTTTACCGTAGCGTAAAAGTTACTCCAGTTCTTATAGCGCGCGGCTCCGACACGTCTCCCTGTACTGCTGCCATGGTAGGCCGAAGTAGTGCTCCCTTGTGAAGCTTTGACCTCGCCTTTTATTTGGTAGTTAAAAGTCTGCTACGCTGCTTGCTTGCTCACGGATAAACATGGTGCTGCCTGGATTTTTTGCCTTCTACTGATTTTTCTTTTCTTCTTTCTCTCTTCTCTTTTTGTCTCCCTCCCATCTTCCACATCCCACACCCTCACCCTTTTTTTTTTGTTACTGGACTTTATTTTTATGCCCATCCACCATTCAG
Seq C2 exon
GGAATTCCTCAAGCTGTACTTCCCCCATTACCAAAGAGGCCTGCGCTTGAAAAAACCAATGGTGCCACCGCAGTGTTCAATACTGGTATTTTCCAATACCAGCAAGCTCTTGCCAACATGCAGCTGCAGCAGCACACAGCCTTTCTCCCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010361:ENSGALT00000016871:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (disopred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCAGTCGGCTGTCAAATCAC
R:
GGTGGGAGAAAGGCTGTGTG
Band lengths:
206-1193
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]