RnoINT0090144 @ rn6
Intron Retention
Gene
ENSRNOG00000014076 | Mbnl1
Description
muscleblind-like splicing regulator 1 [Source:RGD Symbol;Acc:628668]
Coordinates
chr2:150857380-150858459:+
Coord C1 exon
chr2:150857380-150857433
Coord A exon
chr2:150857434-150858305
Coord C2 exon
chr2:150858306-150858459
Length
872 bp
Sequences
Splice sites
5' ss Seq
CTGGTACTA
5' ss Score
3.1
3' ss Seq
TTATACTATTCACTGAACAGGGA
3' ss Score
6.6
Exon sequences
Seq C1 exon
ACTCAGTCGGCTGTCAAATCACTGAAGCGACCCCTCGAGGCAACCTTTGACCTG
Seq A exon
GTACTATGACCTTTCACCTTTTAGCTTGGCATGTAGCTTTATTGTAGATACAGGTTTTTTTGTTTTTGTTTTTATTTTGTTTTTGTTTTTTGTTTTTTGTTTTTGTTCTTTTAAACCGGTTAAATATATATAATCCTTTTCCTGTTTAAAGTGGTTAAGTACAATGAAAAATTGAGTGTGGTTTCCTGATAAATGAGCAGAAAGACCTAAAATGCGTACATAGATGGATATGGTACAGTGAACGACTGGACTCCCAGCAGCCCACATTCAGTTTAACTACATTGTAAAGCGTTCTAATGAAATTCTTGGAGGACAATAAAGTGTGGTTTTCACTCTATATTCATGTACCTGTGTGGTTAGCATGGCTTTAGTGATAGACTTCTTTTCTTTTTAACATATACAGTGCAATATTTAAGAAAAGTTTGCATGCTCTGGGACATTTGCATGTGTCAGCAGATTGGGGAGGGCAGAGCTGGCAGGACACAGCCAGTCACTGTACAGTTCACTATTAACAGTGCTTCTACTCCGCAGTCCTCTGGGGCTTGCACTGCAGCCTTCCTTCTTTCCCAAATAGATGGCTTCTCACAGGAAGCCTGAAGCATTATGGGACATAAAACACCTTACTCATTGTAACATGTGCTCTCTCGTTATTAGTGGGCTTTTGTTGTGGACAAAATAATGCTTCCTTTAAAGCTTTTATCTTGCTTAATTTCTTTAATTGGTTTTATCAACTGGATTTTTTTCCCGTGGGTAGTTGAGTGTCCTGCTGCTTGCTTGCTCGTGCTCCCTAACAGTTCTAGCCTACAACTGATTTTTCTTTTTTTCTTTTTCTCTTTTTACTGGTATTTGTTTTTATACTATTCACTGAACAG
Seq C2 exon
GGAATTCCTCAAGCTGTACTTCCCCCATTGCCAAAGAGGCCTGCTCTTGAAAAAACCAACGGTGCCACCGCAGTCTTTAACACGGGTATTTTCCAATACCAACAGGCTCTAGCCAACATGCAGTTACAGCAGCATACAGCGTTCCTCCCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014076:ENSRNOT00000036808:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (disopred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCAGTCGGCTGTCAAATCAC
R:
CTGGTGGGAGGAACGCTGTAT
Band lengths:
208-1080
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]