MmuINT0096297 @ mm9
Intron Retention
Gene
ENSMUSG00000027763 | Mbnl1
Description
muscleblind-like 1 (Drosophila) [Source:MGI Symbol;Acc:MGI:1928482]
Coordinates
chr3:60417185-60419695:+
Coord C1 exon
chr3:60417185-60417442
Coord A exon
chr3:60417443-60419541
Coord C2 exon
chr3:60419542-60419695
Length
2099 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
3' ss Seq
TTATACTACTCACTAAACAGGGA
3' ss Score
6.59
Exon sequences
Seq C1 exon
GTGTGTCGAGAGTACCAGCGTGGCAATTGCAACAGAGGAGAAAATGACTGTCGGTTTGCTCATCCTGCTGACAGCACAATGATTGATACCAATGACAACACAGTCACTGTCTGCATGGATTACATCAAGGGGAGATGCTCTCGGGAAAAGTGCAAATACTTCCATCCTCCCGCACACCTGCAAGCCAAGATCAAGGCTGCCCAATACCAGGTCAACCAGGCTGCAGCAGCACAGGCTGCAGCTACTGCAGCTGCCATG
Seq A exon
GTGAGTGGAGACAGCAGTGCCCTCCTGTCAGCAATCAGAAAAGATAGTGAACAATTTCTCTACTGCCAGCTATTCATCTATTAACCTCTTCCTCCCGTTTTGCTGAAGATATGTTTGTTCAGGTATCCCACACAATACATAAAGAAGCTACCATTCACAGACGCAAGGATAACTCCTCAAATGTTGCTCATCCTCTTAGCCTAACCCCTAAGACTGTCTCATTCTGGATGTAGGGTTTCTGAAATTCCTGCTTCATAAGGAACCACTTGTCGCCTTTCTGATTGAACGACACTGCCATTTCCAGTCTCTGATTTCTGTATGCCATCCAGCTGGCCCTTGTTCTCCTTGAGTGTGTTCTTCCCCACATCAAGGCTCTTCTTTACATTTATCTTGCCTTTAATAACATCATCTGAAACTATTTAGGAGAATAGCTTCAACAAAATTGTTTTTAAATTAGCTGCAATGATCCTTTTGAATGATCCGCTGTCGAGATCGTGTGAAGGCCTACTGTGGCAGAAACATGATTATTACAGTGCCAAATATTGACTAAGCCACTATACAGGGAAGAGAAGAGCACTAGCACTCAAGGAGTGTTTAAAAAATGAATAAATAAGTAAGGATCATTTAGGGTAGATGCTAAGTGGTTTATCTTAAGATCAACTTCAATGAGACCTAGTAGATGAGTTTAAGGAGGCCATTTCTTCTTGGCTTAGCTGTTTTAACGCTGTCCTTTTTAATATAAATATATAACTTATTCTTTAAATATTCATACAAAAATCATTGTCATGGCACAGTAAAATGATCATGAGAGAGGTCTTTTCTGTGTTTGTTTATGGATACTTGAGCAAAAATACAGAAGGCAGACTCTCTCCTTTTCTCTTTCTTTCACCACCCCCCCTTTTTTTTCTTTAGAGTATTATTTGAAATTAACTACAAAGAGGAATTATCCTCCAATAACAACTCAATAGTGCCTTTATTGTGCATGCTTAGTCTTGTTATTCGTTGTATATGGCATTCCGATGATTTGTTTTTTTATTTGTTTTTTCTCACCTACCCAAAATGCACTGCTGCCCCCATGATGCACCTCTGCTTGCTGTTTATGTTAATGCGCTTGAACCCCACTGGCCCATTGCCATCATGTGCTCGCTGCCTGCTAATTAAGACTCAGTCGGCTGTCAAATCACTGAAGCGACCCCTCGAGGCAACCTTTGACCTGGTACTATGACCTTTCACCTTTTAGCTTGGCATGTAGCTTTATTGTAGATACAGGTTTTTTTGGTTTTTGTTTTTGGTTTGGTTTGGTTTTGGTTTTGTTTTGTTTTGTTCTGTTCTGTTTTGTTTTTAACTGATTGAAATAGATATAATCCTTTTCCTGTTTAAAGTGGTTAAGTACAATGAAAATCTGAGTGTGGTTTCCTGAAAAAATGAGCAGAAAGACCTAAAATGCATACATAGATGGATAAGGTACAATGAAAGACTGGAATCCCAGCAGCCCACATTCAGTTTAACTATATTGTAAAACGTTCTAATGAAAGACTCGGAGGACGATAAAGTGTGGTGTTCACTCTATATTTATGTACCTGTGTGGTTAGCATGGCTTTAGTGATAGGCTTCTTTTCTTTTTAACATAGAGTGCAGTATTTCAGAAGAGTTTGCATGCTCTGGGACATTTGCATGTGTCAGCAGGCTGGGGAGGGCAGAGCTGGCAGGACCCAGCCAGTCACTGTACAGTTAACTATTAACAGTGCTTCTACTTGGCAGTCCTCACGGGGCTCCCGCGGCAGCTTTCCTTCTTCCCCAAATAGATGGCTTCTCACAGAAAGCCCGAAGCATTATGGGACATAAAAGACCTTCCGCGTTATAACATGTGCTCTCGTTACTCGTGGGCTTTTGTTGTGGACAAAATAATGCTTCCTCTAAAGCTTTTATCTTGCTTAATTTCTTTAATTGGTTTTGTCACCTGGATTGTCCCCCTGGGTAGTTAAGTGTTCTGCTGCTTGCTTGCTCGTGCCCCCTAACTGTTCTAGCCTACAACTGATTTCTCTTTTTTTCTTTTTCTCTTTTTACTGGTATTTGTTTTTATACTACTCACTAAACAG
Seq C2 exon
GGAATTCCTCAAGCTGTACTTCCCCCATTGCCAAAGAGGCCTGCTCTTGAAAAAACCAACGGTGCCACCGCAGTCTTTAACACTGGTATTTTCCAATACCAACAGGCTCTAGCCAACATGCAGTTACAGCAGCATACAGCATTTCTCCCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027763-Mbnl1:NM_020007:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (disopred):
C1=0.344 A=NA C2=0.640
Domain overlap (PFAM):
C1:
PF0064219=zf-CCCH=PD(81.5=25.6)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: