MmuINT0096297 @ mm10
Intron Retention
Gene
ENSMUSG00000027763 | Mbnl1
Description
muscleblind-like 1 (Drosophila) [Source:MGI Symbol;Acc:MGI:1928482]
Coordinates
chr3:60613263-60615773:+
Coord C1 exon
chr3:60613263-60613520
Coord A exon
chr3:60613521-60615619
Coord C2 exon
chr3:60615620-60615773
Length
2099 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
3' ss Seq
TTATACTACTCACTAAACAGGGA
3' ss Score
6.59
Exon sequences
Seq C1 exon
GTGTGTCGAGAGTACCAGCGTGGCAATTGCAACAGAGGAGAAAATGACTGTCGGTTTGCTCATCCTGCTGACAGCACAATGATTGATACCAATGACAACACAGTCACTGTCTGCATGGATTACATCAAGGGGAGATGCTCTCGGGAAAAGTGCAAATACTTCCATCCTCCCGCACACCTGCAAGCCAAGATCAAGGCTGCCCAATACCAGGTCAACCAGGCTGCAGCAGCACAGGCTGCAGCTACTGCAGCTGCCATG
Seq A exon
GTGAGTGGAGACAGCAGTGCCCTCCTGTCAGCAATCAGAAAAGATAGTGAACAATTTCTCTACTGCCAGCTATTCATCTATTAACCTCTTCCTCCCGTTTTGCTGAAGATATGTTTGTTCAGGTATCCCACACAATACATAAAGAAGCTACCATTCACAGACGCAAGGATAACTCCTCAAATGTTGCTCATCCTCTTAGCCTAACCCCTAAGACTGTCTCATTCTGGATGTAGGGTTTCTGAAATTCCTGCTTCATAAGGAACCACTTGTCGCCTTTCTGATTGAACGACACTGCCATTTCCAGTCTCTGATTTCTGTATGCCATCCAGCTGGCCCTTGTTCTCCTTGAGTGTGTTCTTCCCCACATCAAGGCTCTTCTTTACATTTATCTTGCCTTTAATAACATCATCTGAAACTATTTAGGAGAATAGCTTCAACAAAATTGTTTTTAAATTAGCTGCAATGATCCTTTTGAATGATCCGCTGTCGAGATCGTGTGAAGGCCTACTGTGGCAGAAACATGATTATTACAGTGCCAAATATTGACTAAGCCACTATACAGGGAAGAGAAGAGCACTAGCACTCAAGGAGTGTTTAAAAAATGAATAAATAAGTAAGGATCATTTAGGGTAGATGCTAAGTGGTTTATCTTAAGATCAACTTCAATGAGACCTAGTAGATGAGTTTAAGGAGGCCATTTCTTCTTGGCTTAGCTGTTTTAACGCTGTCCTTTTTAATATAAATATATAACTTATTCTTTAAATATTCATACAAAAATCATTGTCATGGCACAGTAAAATGATCATGAGAGAGGTCTTTTCTGTGTTTGTTTATGGATACTTGAGCAAAAATACAGAAGGCAGACTCTCTCCTTTTCTCTTTCTTTCACCACCCCCCCTTTTTTTTCTTTAGAGTATTATTTGAAATTAACTACAAAGAGGAATTATCCTCCAATAACAACTCAATAGTGCCTTTATTGTGCATGCTTAGTCTTGTTATTCGTTGTATATGGCATTCCGATGATTTGTTTTTTTATTTGTTTTTTCTCACCTACCCAAAATGCACTGCTGCCCCCATGATGCACCTCTGCTTGCTGTTTATGTTAATGCGCTTGAACCCCACTGGCCCATTGCCATCATGTGCTCGCTGCCTGCTAATTAAGACTCAGTCGGCTGTCAAATCACTGAAGCGACCCCTCGAGGCAACCTTTGACCTGGTACTATGACCTTTCACCTTTTAGCTTGGCATGTAGCTTTATTGTAGATACAGGTTTTTTTGGTTTTTGTTTTTGGTTTGGTTTGGTTTTGGTTTTGTTTTGTTTTGTTCTGTTCTGTTTTGTTTTTAACTGATTGAAATAGATATAATCCTTTTCCTGTTTAAAGTGGTTAAGTACAATGAAAATCTGAGTGTGGTTTCCTGAAAAAATGAGCAGAAAGACCTAAAATGCATACATAGATGGATAAGGTACAATGAAAGACTGGAATCCCAGCAGCCCACATTCAGTTTAACTATATTGTAAAACGTTCTAATGAAAGACTCGGAGGACGATAAAGTGTGGTGTTCACTCTATATTTATGTACCTGTGTGGTTAGCATGGCTTTAGTGATAGGCTTCTTTTCTTTTTAACATAGAGTGCAGTATTTCAGAAGAGTTTGCATGCTCTGGGACATTTGCATGTGTCAGCAGGCTGGGGAGGGCAGAGCTGGCAGGACCCAGCCAGTCACTGTACAGTTAACTATTAACAGTGCTTCTACTTGGCAGTCCTCACGGGGCTCCCGCGGCAGCTTTCCTTCTTCCCCAAATAGATGGCTTCTCACAGAAAGCCCGAAGCATTATGGGACATAAAAGACCTTCCGCGTTATAACATGTGCTCTCGTTACTCGTGGGCTTTTGTTGTGGACAAAATAATGCTTCCTCTAAAGCTTTTATCTTGCTTAATTTCTTTAATTGGTTTTGTCACCTGGATTGTCCCCCTGGGTAGTTAAGTGTTCTGCTGCTTGCTTGCTCGTGCCCCCTAACTGTTCTAGCCTACAACTGATTTCTCTTTTTTTCTTTTTCTCTTTTTACTGGTATTTGTTTTTATACTACTCACTAAACAG
Seq C2 exon
GGAATTCCTCAAGCTGTACTTCCCCCATTGCCAAAGAGGCCTGCTCTTGAAAAAACCAACGGTGCCACCGCAGTCTTTAACACTGGTATTTTCCAATACCAACAGGCTCTAGCCAACATGCAGTTACAGCAGCATACAGCATTTCTCCCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027763:ENSMUST00000099087:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (disopred):
C1=0.182 A=NA C2=0.225
Domain overlap (PFAM):
C1:
PF0064219=zf-CCCH=PD(81.5=25.6)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types