GgaINT0031672 @ galGal3
Intron Retention
Gene
ENSGALG00000010361 | MBNL1_CHICK
Description
NA
Coordinates
chr9:24961024-24963877:-
Coord C1 exon
chr9:24963620-24963877
Coord A exon
chr9:24961178-24963619
Coord C2 exon
chr9:24961024-24961177
Length
2442 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
3' ss Seq
TATGCCCATCCACCATTCAGGGA
3' ss Score
7.15
Exon sequences
Seq C1 exon
GTGTGTCGGGAGTACCAACGCGGGAACTGCAACCGGGGCGAGAACGACTGCCGGTTCGCTCACCCCGCCGACAGCGCCATGATCGACACCAACGATAACACCGTTACGGTCTGCATGGATTACATCAAAGGGAGATGCTCACGGGAAAAGTGCAAATACTTCCACCCTCCAGCACATCTGCAAGCCAAGATCAAGGCTGCCCAGTACCAGGTTAACCAGGCTGCAGCTGCCCAGGCAGCAGCGACGGCGGCTGCCATG
Seq A exon
GTGAGTTTGGAAGCCGCATCCGACGGTACGAGTGCGCCGAGAGGGAGCGAGCAGTGTTAGCTACTGTTGCTGGGATGTGCTCGGGGTCCCGGCTGGTGTGGGGCACAGCGAGCTGCCCCCGCACATGGTGCCAGACCGGCTCTTGTGGAGTTTGAGGCCGCTACAGTATGTCACTAATTCTGCCTGCTGGTGTATGGAGTACATGTACATATACATGTGCATATGTGTGTGTGTGTGCATACATGTATATAGAGTCTATTGTATGTTTGTGTGTGGGTAGATGCATAGCTATGTCGAGGCACAGACAGACCTCTGGTGGTGAGCTGCCGCCAGGCTGTGTGCATGGCAGAGTAGCTTGAGGCCACAGCCACCCTGCACCCGCGGCAGGCAGCATGGGCGGGCTGCTGGAGCCGGCACTCCGCCGGGCCCGGCACAGTGCAGGGCCTGGCTCTGGCAGGTGGCCAGCGCGGTGTGGGATCCCCGGCCACATGCAGACCCTGGTGGCACTGAGGCCCTGGCCGCATGCAGGCCTCGGCCACGGCCATACAGGCCCTGACAGTATTGAGGCCCTGGCCGCCCAGGCCCTGGCCACGCCATCCATACGTGTGAGTGCAGGGAGGGTGCAAAGAGCCAGGGTGTGGTGTGGGGCACATGGGGGCTGGCTCTGAGAGCCCCCCGTCCCACTGCCCCCCGATGCAAAGGGCCCTTTGTGCATGCCTAGTCTTGTTACCGTATATTAGGGATCCGGTGATTTTTTTTATTGTTTTTCTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGTGGATTCTCCCATCCCATTTCTATCCCATCCCATCTCTCTCATCCCCTCCATAAAATCCCCATCCCATCCCCTCCCTTCCCCATCCTATTCCTCCAATTGCTGTCCCATCCCAGTCCCATCCCCGTCCCATCCCTGGGAGCCGCGAGGGCCGGGCCCGGTGCAGGTCGCGTTGGCATGGCTTGGTGGCGCTGCGGCGTGGAGGCGGCCGGGGGTGCCGGCATGCGGCGAGCTCTGCATGCCAGGCAGGCGCTGGGGCCGGGAGTGGGGTAGTGCCGGCAGCGCCGCGCCGCGCTGTGCCGATTAACATCGCTTCTACGTGTTGATCCTCATGGAGCTCTCAGCGCTGCTTCCCCCGCCCGATAGCCTTGCTCCCCGCCCGAGCCCTGAAGCTTTACCGTAGCGTAAAAGTTACTCCAGTTCTTATAGCGCGCGGCTCCGACACGTCTCCCTGTACTGCTGCCATGGTAGGCCGAAGTAGTGCTCCCTTGTGAAGCTTTGACCTCGCCTTTTATTTGGTAGTTAAAAGTCTGCTACGCTGCTTGCTTGCTCACGGATAAACATGGTGCTGCCTGGATTTTTTGCCTTCTACTGATTTTTCTTTTCTTCTTTCTCTCTTCTCTTTTTGTCTCCCTCCCATCTTCCACATCCCACACCCTCACCCTTTTTTTTTTGTTACTGGACTTTATTTTTATGCCCATCCACCATTCAG
Seq C2 exon
GGAATTCCTCAAGCTGTACTTCCCCCATTACCAAAGAGGCCTGCGCTTGAAAAAACCAATGGTGCCACCGCAGTGTTCAATACTGGTATTTTCCAATACCAGCAAGCTCTTGCCAACATGCAGCTGCAGCAGCACACAGCCTTTCTCCCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010361:ENSGALT00000016870:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (disopred):
C1=0.302 A=NA C2=0.375
Domain overlap (PFAM):
C1:
PF0064219=zf-CCCH=PD(81.5=25.6)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]