GgaINT0031672 @ galGal4
Intron Retention
Gene
ENSGALG00000010361 | MBNL1
Description
Muscleblind-like protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q5ZKW9]
Coordinates
chr9:22857446-22858643:-
Coord C1 exon
chr9:22858386-22858643
Coord A exon
chr9:22857500-22858385
Coord C2 exon
chr9:22857446-22857499
Length
886 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
3' ss Seq
CTCGCTGCCTGCTAATTAAGACT
3' ss Score
1.06
Exon sequences
Seq C1 exon
GTGTGTCGGGAGTACCAACGCGGGAACTGCAACCGGGGCGAGAACGACTGCCGGTTCGCTCACCCCGCCGACAGCGCCATGATCGACACCAACGATAACACCGTTACGGTCTGCATGGATTACATCAAAGGGAGATGCTCACGGGAAAAGTGCAAATACTTCCACCCTCCAGCACATCTGCAAGCCAAGATCAAGGCTGCCCAGTACCAGGTTAACCAGGCTGCAGCTGCCCAGGCAGCAGCGACGGCGGCTGCCATG
Seq A exon
GTGAGTTTGGAAGCCGCATCCGACGGTACGAGTGCGCCGAGAGGGAGCGAGCAGTGTTAGCTACTGTTGCTGGGATGTGCTCGGGGTCCCGGCTGGTGTGGGGCACAGCGAGCTGCCCCCGCACATGGTGCCAGACCGGCTCTTGTGGAGTTTGAGGCCGCTACAGTATGTCACTAATTCTGCCTGCTGGTGTATGGAGTACATGTACATATACATGTGCATATGTGTGTGTGTGTGCATACATGTATATAGAGTCTATTGTATGTTTGTGTGTGGGTAGATGCATAGCTATGTCGAGGCACAGACAGACCTCTGGTGGTGAGCTGCCGCCAGGCTGTGTGCATGGCAGAGTAGCTTGAGGCCACAGCCACCCTGCACCCGCGGCAGGCAGCATGGGCGGGCTGCTGGAGCCGGCACTCCGCCGGGCCCGGCACAGTGCAGGGCCTGGCTCTGGCAGGTGGCCAGCGCGGTGTGGGATCCCCGGCCACATGCAGACCCTGGTGGCACTGAGGCCCTGGCCGCATGCAGGCCTCGGCCACGGCCATACAGGCCCTGACAGTATTGAGGCCCTGGCCGCCCAGGCCCTGGCCACGCCATCCATACGTGTGAGTGCAGGGAGGGTGCAGGGAGCCAGGGTGTGGTGTGGGGCACATGGGGGCTGGCTCTGAGAGCCCCCCGTCCCACTGCCCCCCGCTGCCCCAGGCCCTTTGTGCATGCCTAGTCTTGTTACCGTTGTACACGGCATCCGGTGATTTGTTTTTATTTGTTTTTTCTCACCTACCCAAATGCACTGCTGCCCCCATGATGCACCTCTGCTTGCTGTTTATGTTAATGCGCTTGACCCCACTGGCCATTGCCATCATGTGCTCGCTGCCTGCTAATTAAG
Seq C2 exon
ACTCAGTCGGCTGTCAAATCACTGAAGCGACCCCTCGAGGCAACCTTTGACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010361:ENSGALT00000016871:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (disopred):
C1=0.151 A=NA C2=0.778
Domain overlap (PFAM):
C1:
PF0064219=zf-CCCH=PD(81.5=25.6)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTGTCGGGAGTACCAACG
R:
CAGGTCAAAGGTTGCCTCGAG
Band lengths:
312-1198
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]