BtaINT0090401 @ bosTau6
Intron Retention
Gene
ENSBTAG00000004564 | MBNL1
Description
muscleblind-like splicing regulator 1 [Source:HGNC Symbol;Acc:HGNC:6923]
Coordinates
chr1:116252993-116255392:-
Coord C1 exon
chr1:116255135-116255392
Coord A exon
chr1:116253014-116255134
Coord C2 exon
chr1:116252993-116253013
Length
2121 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
3' ss Seq
CCTCCACTCACTAAAACAGGGAA
3' ss Score
-5.85
Exon sequences
Seq C1 exon
GTATGTCGAGAGTACCAGCGAGGCAATTGCAACAGAGGAGAAAATGATTGTCGGTTTGCCCATCCTGCTGACAGCACAATGATTGACACCAATGACAACACAGTCACCGTGTGTATGGATTACATCAAAGGGAGATGCTCTCGGGAAAAGTGCAAATACTTCCATCCTCCCGCACATCTGCAAGCCAAGATCAAGGCTGCCCAATACCAGGTCAACCAGGCTGCCGCAGCACAGGCTGCAGCCACTGCAGCTGCCATG
Seq A exon
GTGAGTAGAGATCTTAGCTCAGTCCTTGTTAACGGTCACAAAACAGTGAACAGCTGTATCTGACAACAAGCTATTCATTTATTAACCTTTAAAAATTTTTTTTTTTTTTTTTTGCTGAAGATATGTTTGTTCAGGTATCCCAGACAATACATAATGAAGTGACCATTCAGAGAAGTGAGGGTAACTCCTCAAATGGTTCAGATTGCTCCTACCCTCGGCCTAATTTTTAATACTCTGTCTTACTCTGGATGTAGGGTTTCTGAAATTTCTGCTTTGTACAGAACACCTGTCTCCTTTTCGGTTTAACGATACTGCCATTTCTGATCCTCTTATTTCTGTGTGCTATCTAATCAGCCATTGTTTTCCTTCGGTGTGTTCTTCTGCACATCAAGGCTCTTCTCTACATTTATTTTGCTTTAACCATAACAAAATCTGAAACTGTTTAGGAGAATTGCTTCAACAAAACTGTTTTAAGAATTCAATACATGATGTTGAGCAGTTTGCTTATCTAGATTCTCTTGAACTATATTGTGGCATAAACAGAACTGTAAAACCAGAGAAGTTTGCCTATGCCATTACATAGAAAGGAGAAAGCAGTACTGAAGGAAGAGTTAGAAATGGATCATTTAGAACAGATACTAAACTATATAACGAAGGTAAATTTTAACGTGATCTAATAGCTGATTTTAATGAGTCCATTTTTGTTCTTTGCTTAGCTGTTTTAATGTTGTCCTTTTTTTTTTTACATAAATATATGACTTAATTGTTAAATTATTCATGAAAAAGAACACTGTGTGGTATTTCGTAGCACAGTCAAATAGTTACGGAGAGGTCTTTTCTGTGTTTGTTTATGGATACTTGAGCAAAAATACAGAAGGCAGACTCTCTCCTCTTCTCTTCCTTCCACTCTTCTTTTTTTTTTTTTTTTTTCTGTTAGAGTATCTTGTTTGTAATTAACTACGAAGAGGAGTTATCCTCCCAATAACAACTCAGTAGTGCCTTTATTGTGCATGCTTAGTCTTGTTATTCGTTGTATATGGCATTCCGATGATTTGTTTTTTTATTTGTTTTTTCTCACCTACCCAAAAATGCACTGCTGCCCCCATGATGCACCTCTGCTTGCTGTTTATGTTAATGCGCTTGAACCCCACTGGCCCATTGCCATCATGTGCTCGCTGCCTGCTAATTAAGACTCAGTCGGCTGTCAAATCACTGAAGCGACCCCTCGAGGCAACCTTTGACCTGGTACTATGACCTTTCACCTTTTAGCTTGGCATGTAGCTTTATTGTAGATACAAGTTTTTTTTTTTTTTTAATCAATTTAAATATATATATTCCTTTTTCTGTTATAAAGTTGTAAAGTACAATGAAAACTGAGTGTGGTTTCCTGACAAAATTAGTGGAAAGACTGTAAACAAGTCCCTGGACAGATGTGGTACAATGAAAGAATCCAAAAACCCAGCAGCCCACATTCAGTTTAACTACATTGTAGAATGTTCTAATGAAGTATTTGAAGGACATTAAAAATGTATTTTTGGACTGTATATTTATGTACCTGTTTGGTTAGCATGGCTTTAGTGATAGAATTATTGACTTTTTAATATTTATAGTTCAGTGTTTTAAGAAAAAAAAAAAAACTTGCATGCTCTGGGACATGTGCATGTTTAGGTAGATGTGGGGAGGGGGGCAGAGTGGGACTGGGTTTATTTTACCAGTTTCGGTCACTTCGTACAATTAACTATTAACATTGCTTATACTTGTCAATCCTCATGGAGCTCGCAGTGCAGCTTTTCTTCTTTTCCCAAATCAACGGCTTCTCCCAGAAAGCCTGAAGCATTATGGGACTTAAAACACTTTAACACATTATAACATGTGCTCTCATACTAGTGGGATTGTTTTTCTCCAAGACAAAAATAATGCTTCCTTTAAAGCTTTTATCTTGCTTTTTTTTTTTCCCTTTAAATTTTTGTTTATTGGATGTTTTTTTCCTCGGGTAGTTAAGTGCTCTGCTGCTTGCTTGCTCATGCTTCCTAACAATTTTAGCCTTCAGCTGGATTTTTTCATTTTTCTTTTCTCTTTTTACTGGTATTTGTTTTTTATACCTCCACTCACTAAAACAGG
Seq C2 exon
GAAATTCCTCAAGCTGTACTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004564:ENSBTAT00000005998:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (disopred):
C1=0.184 A=NA C2=0.886
Domain overlap (PFAM):
C1:
PF0064219=zf-CCCH=PD(81.5=25.6)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development