GgaINT1031290 @ galGal4
Intron Retention
Gene
NA
Description
NA
Coordinates
chr17:6285722-6286130:-
Coord C1 exon
chr17:6286087-6286130
Coord A exon
chr17:6285901-6286086
Coord C2 exon
chr17:6285722-6285900
Length
186 bp
Sequences
Splice sites
5' ss Seq
AATGTGAGA
5' ss Score
3.37
3' ss Seq
CACTTTTTCCTCTTCTTCAGAAC
3' ss Score
10.36
Exon sequences
Seq C1 exon
CCTTCAGTTTGGAATGCACATCTTGTAATTCAGAAAGTCAGAAT
Seq A exon
GTGAGAGCAAATTTGCACTGACTATTTGCTTGAAAGAGTAATGTTTATGGTGGAAGGGTTTTTTCCTAGCGTTCTGAAGCAGAATATACCTTTTCAGTTTCACTCCTCTTCAGGTAAGTAAAAGTAACTTTTTCCTCTAAAATCCTGACATTTTTTACATTTCTCTCACTTTTTCCTCTTCTTCAG
Seq C2 exon
AACTTATCATGGCTAGAGGAGAAGGAGAAGGAGGTCGTCAGTGCTCTGCGCTACTTCAAGACGATTGTGGACAAAATGGCAATTGATAAGAAAGTATTAGAGATGCTGCCAGGCTCAGCAAGTAAAGTGCTGGAAGCCATCCTGCCCCTGGTGCAAAGTGACCCACGCATCCAACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003712:ENSGALT00000005891:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTCAGTTTGGAATGCACATCT
R:
TTGGATGCGTGGGTCACTTTG
Band lengths:
218-404
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]