HsaALTA0007604-2/3 @ hg38
Alternative 3'ss
Gene
ENSG00000137872 | SEMA6D
Description
semaphorin 6D [Source:HGNC Symbol;Acc:HGNC:16770]
Coordinates
chr15:47766105-47766677:+
Coord C1 exon
chr15:47766105-47766182
Coord A exon
chr15:47766577-47766615
Coord C2 exon
chr15:47766616-47766677
Length
39 bp
Sequences
Splice sites
5' ss Seq
GCTGTAAGT
5' ss Score
8.56
3' ss Seq
TCACTTGTGTTCCTATGAAGGCT
3' ss Score
6.93
Exon sequences
Seq C1 exon
GTCTTGTATTGCATCTCGTGACCCGTATTGTGGCTGGTTAAGCCAGGGATCCTGTGGTAGAGTGACCCCAGGGATGCT
Seq A exon
GCTGTTAACCGAAGACTTCTTTGCTTTCCATAACCACAG
Seq C2 exon
TGCTGAAGGATATGAACAAGACACAGAATTCGGCAACACAGCTCATCTAGGGGACTGCCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000137872-53-60,53-58,53-57-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.006 A=NA C2=0.036
Domain overlap (PFAM):
C1:
PF0143720=PSI=FE(43.3=100)
A:
NA
C2:
PF0143720=PSI=FE(35.0=100)
Other Skipping Isoforms:
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATCTCGTGACCCGTATTGT
R:
CCTAGATGAGCTGTGTTGCCG
Band lengths:
119-158
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains