HsaALTA1049430-2/2 @ hg38
Alternative 3'ss
Gene
ENSG00000180448 | ARHGAP45
Description
Rho GTPase activating protein 45 [Source:HGNC Symbol;Acc:HGNC:17102]
Coordinates
chr19:1080464-1080781:+
Coord C1 exon
chr19:1080464-1080547
Coord A exon
chr19:1080682-1080692
Coord C2 exon
chr19:1080693-1080781
Length
11 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
CAGTCCTGATTCCCGCCCAGGGG
3' ss Score
3.57
Exon sequences
Seq C1 exon
CCGGGCGAGGACACCAGGTTCACAAGTCATGGCCGCTCTCGATCTCAGACTCGGACAGTGGGCTGGACCCCGGCCCTGGCGCAG
Seq A exon
GGGACTTTAAG
Seq C2 exon
AAGTTCGAGCGGACGTCATCCAGTGGTACCATGTCGTCCACGGAGGAGCTGGTGGACCCAGACGGTGGAGCCGGGGCTTCAGCCTTTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000180448-36-46,36-45-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCTCGATCTCAGACTCGGA
R:
CGTGGACGACATGGTACCACT
Band lengths:
92-103
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains