MmuALTA1027491-3/3 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000035697 | Arhgap45
Description
Rho GTPase activating protein 45 [Source:MGI Symbol;Acc:MGI:1917969]
Coordinates
chr10:80026657-80026927:+
Coord C1 exon
chr10:80026657-80026734
Coord A exon
chr10:80026823-80026836
Coord C2 exon
chr10:80026837-80026927
Length
14 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAAG
5' ss Score
6.66
3' ss Seq
CACAACTGTTTTCTATTTAGGGG
3' ss Score
9.18
Exon sequences
Seq C1 exon
GGGGACGAGGTCACCAGGTTCATAAGTCCTGGCCCATCTCCATCTCAGACACCGAAGTTGGTCTGGACACCAGCTCAG
Seq A exon
GGGACTTGAAGAAG
Seq C2 exon
TTCGATCGAACATCTTCCAGTGGGACGATGTCATCCAGTGAGGAGCTGGGGGATCAGGAAGCTGGCTTGGTAGCTTCCGCCTTTGATTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035697-54-44,54-43,54-42-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.963 A=NA C2=0.833
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGCCCATCTCCATCTCAGA
R:
GCTCCTCACTGGATGACATCG
Band lengths:
96-110
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types