GgaALTA1015782-1/4 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000002559 | HMHA1
Description
minor histocompatibility protein HA-1 [Source:RefSeq peptide;Acc:NP_001026108]
Coordinates
chr28:2848059-2848638:+
Coord C1 exon
chr28:2848059-2848133
Coord A exon
NA
Coord C2 exon
chr28:2848537-2848638
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
3' ss Seq
AGCAGGCTTTGCTTTAGCAGGAG
3' ss Score
2.38
Exon sequences
Seq C1 exon
GGAGGGGACACCAGGTGCACAAATCCTGGCCGACCTCCACCTCCGAAGCCGACAGCAGCCTGGATTCCAGCACAG
Seq A exon
NA
Seq C2 exon
GAGAGTTTGGGCACAAACTGCAGCGCTTGTCATCCAATGGCACCATGTCCTCCAGCGAGGAGCTGGGAGAGAAGGATGAGAACGCCGCCTCCTTTGAGCAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002559-18-24,18-23,18-22,18-21-1/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACCAGGTGCACAAATCCTG
R:
GATGACAAGCGCTGCAGTTTG
Band lengths:
102-105
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]