RnoALTA0004295-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000013220 | Arhgap45
Description
Rho GTPase activating protein 45 [Source:RGD Symbol;Acc:1308662]
Coordinates
chr7:12731602-12731874:-
Coord C1 exon
chr7:12731797-12731874
Coord A exon
chr7:12731696-12731706
Coord C2 exon
chr7:12731602-12731695
Length
11 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAAG
5' ss Score
6.66
3' ss Seq
CAACCCCATTTTCTGTTTAGGGG
3' ss Score
7.64
Exon sequences
Seq C1 exon
GGGGACGAGGTCATCAGGTACATAAGTCCTGGCCTATCTCCATCTCAGACACCGAAGTCAGCCTGGACGTCAGCTCAG
Seq A exon
GGGACTTGAAG
Seq C2 exon
AAGTTCGATCGAACCTCGTCCAGCGGGACCATGTCATCCAATGAGGAGCTGGTAGATCAGGAAGCTGGCTTGGTCGCCTCCGCTTTTGATTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013220-26-18,26-17-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.593 A=NA C2=0.667
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCAGACACCGAAGTCAGCC
R:
AGCCAGCTTCCTGATCTACCA
Band lengths:
106-117
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]