GgaEX1028882 @ galGal4
Exon Skipping
Gene
ENSGALG00000002559 | HMHA1
Description
minor histocompatibility protein HA-1 [Source:RefSeq peptide;Acc:NP_001026108]
Coordinates
chr28:2848059-2849275:+
Coord C1 exon
chr28:2848059-2848133
Coord A exon
chr28:2848537-2848638
Coord C2 exon
chr28:2849112-2849275
Length
102 bp
Sequences
Splice sites
3' ss Seq
AGCAGGCTTTGCTTTAGCAGGAG
3' ss Score
2.38
5' ss Seq
AGAGTATGT
5' ss Score
5.66
Exon sequences
Seq C1 exon
GGAGGGGACACCAGGTGCACAAATCCTGGCCGACCTCCACCTCCGAAGCCGACAGCAGCCTGGATTCCAGCACAG
Seq A exon
GAGAGTTTGGGCACAAACTGCAGCGCTTGTCATCCAATGGCACCATGTCCTCCAGCGAGGAGCTGGGAGAGAAGGATGAGAACGCCGCCTCCTTTGAGCAGA
Seq C2 exon
GCATCAATGGGATCACCCCGGAGATGACGGCTCCCACGGGGCCCTTCCGGAACGTGGGCCTGTCCAGGGCAGCTCAGACCCACCGGCTGAGGAAGCTGAGGGCCCCCTCCAAGTGCCGGGAGTGCAACAGCTACGTGTACTTCCAGGGGGCAGAATGTGAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002559_CASSETTE2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.436
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0013017=C1_1=PU(57.1=50.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACACCAGGTGCACAAATCC
R:
CTCCTCACATTCTGCCCCCT
Band lengths:
234-336
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]