RnoEX6030591 @ rn6
Exon Skipping
Gene
ENSRNOG00000013220 | Arhgap45
Description
Rho GTPase activating protein 45 [Source:RGD Symbol;Acc:1308662]
Coordinates
chr7:12731030-12731874:-
Coord C1 exon
chr7:12731797-12731874
Coord A exon
chr7:12731602-12731706
Coord C2 exon
chr7:12731030-12731202
Length
105 bp
Sequences
Splice sites
3' ss Seq
CAACCCCATTTTCTGTTTAGGGG
3' ss Score
7.64
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
GGGGACGAGGTCATCAGGTACATAAGTCCTGGCCTATCTCCATCTCAGACACCGAAGTCAGCCTGGACGTCAGCTCAG
Seq A exon
GGGACTTGAAGAAGTTCGATCGAACCTCGTCCAGCGGGACCATGTCATCCAATGAGGAGCTGGTAGATCAGGAAGCTGGCTTGGTCGCCTCCGCTTTTGATTCAG
Seq C2 exon
CTGACCTCAATGGCATGGATCCCGAGTTACCTGTTGCCATGCCCAGTGGACCCTTCCGCCATGTGGGATTGTCCAAGGCAGCCCGCACACACCGACTTCGCAAGCTGCGAACGCCGGCCAAGTGCAGAGAGTGTAACAGCTACGTGTACTTCCAAGGGGCCGAATGTGAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013220-'26-20,'26-17,28-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.593 A=0.667 C2=0.310
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0013017=C1_1=PU(57.1=48.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGACGAGGTCATCAGGTACA
R:
CATTCGGCCCCTTGGAAGTAC
Band lengths:
243-348
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]