DreEX6098624 @ danRer10
Exon Skipping
Gene
ENSDARG00000062049 | hmha1b
Description
histocompatibility (minor) HA-1 b [Source:ZFIN;Acc:ZDB-GENE-071213-2]
Coordinates
chr22:17595068-17595707:-
Coord C1 exon
chr22:17595609-17595707
Coord A exon
chr22:17595311-17595412
Coord C2 exon
chr22:17595068-17595231
Length
102 bp
Sequences
Splice sites
3' ss Seq
TAATTATTATTTTTTTATAGGTG
3' ss Score
9.17
5' ss Seq
CAAGTGAGA
5' ss Score
5.26
Exon sequences
Seq C1 exon
CTCGAGGTCACATGACTCACAAATCCTGGGGCTCCACAGTGAGTGACACAGACAGTGTAGGAGGAGGAAGTGGCCTGGAATCCCCGACTACCAGCACAG
Seq A exon
GTGATATTAGTAAAATGACCAGGACGTCATCTACAGGAACCATGTCATCAAATGAAGATATAGATGAGAAAGACGCAAATGTTACTTCCTTTGAAACGCCAA
Seq C2 exon
ATATAAATGGCATTGAGCCTGAGATTGTGGTGCCCACTGGGCCCTTCAGGAACATTGGCTTGTCAAAAGCCGCTCAGACGCACAAACTGCGTAAACTGCGCTCTCCATCCAAATGCAGAGAATGTGACAGCTACGTTTATTTCCAGGGAGCCGAGTGTGAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062049-'14-19,'14-18,15-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.218
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0013017=C1_1=PU(57.1=50.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTCACAAATCCTGGGGCTC
R:
ACACTCGGCTCCCTGGAAATA
Band lengths:
244-346
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]