MmuEX6049722 @ mm9
Exon Skipping
Gene
ENSMUSG00000035697 | Hmha1
Description
histocompatibility (minor) HA-1 [Source:MGI Symbol;Acc:MGI:1917969]
Coordinates
chr10:79489402-79489950:+
Coord C1 exon
chr10:79489402-79489479
Coord A exon
chr10:79489568-79489672
Coord C2 exon
chr10:79489778-79489950
Length
105 bp
Sequences
Splice sites
3' ss Seq
CACAACTGTTTTCTATTTAGGGG
3' ss Score
9.18
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
GGGGACGAGGTCACCAGGTTCATAAGTCCTGGCCCATCTCCATCTCAGACACCGAAGTTGGTCTGGACACCAGCTCAG
Seq A exon
GGGACTTGAAGAAGTTCGATCGAACATCTTCCAGTGGGACGATGTCATCCAGTGAGGAGCTGGGGGATCAGGAAGCTGGCTTGGTAGCTTCCGCCTTTGATTCAG
Seq C2 exon
CTGACCTCAATGGCATGGACCCCGAGTTACCTGTGGCCATGCCCAGTGGACCCTTCCGCCATGTGGGATTGTCCAAGGCAGCCCGCACACACCGACTTCGCAAACTGCGCACGCCAGCCAAGTGCAGAGAGTGTAACAGCTATGTGTACTTCCAAGGAGCTGAATGTGAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035697-'21-17,'21-16,23-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.963 A=0.833 C2=0.310
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0013017=C1_1=PU(57.1=48.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACGAGGTCACCAGGTTCAT
R:
TCACATTCAGCTCCTTGGAAGT
Band lengths:
245-350
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: