HsaEX0002604 @ hg19
Exon Skipping
Gene
ENSG00000143382 | ADAMTSL4
Description
ADAMTS-like 4 [Source:HGNC Symbol;Acc:19706]
Coordinates
chr1:150528638-150529526:+
Coord C1 exon
chr1:150528638-150528842
Coord A exon
chr1:150529097-150529269
Coord C2 exon
chr1:150529415-150529526
Length
173 bp
Sequences
Splice sites
3' ss Seq
CTCTCACCTCTGACCCGCAGCAC
3' ss Score
7.49
5' ss Seq
TATGTGAGC
5' ss Score
2.97
Exon sequences
Seq C1 exon
AGCCCCGGCTGTGATGGGATCCTTGGCTCTGGCAGGCGTCCTGATGGCTGTGGAGTCTGTGGGGGTGATGATTCTACCTGTCGCCTTGTTTCGGGGAACCTCACTGACCGAGGGGGCCCCCTGGGCTATCAGAAGATCTTGTGGATTCCAGCGGGAGCCTTGCGGCTCCAGATTGCCCAGCTCCGGCCTAGCTCCAACTACCTGG
Seq A exon
CACTTCGTGGCCCTGGGGGCCGGTCCATCATCAATGGGAACTGGGCTGTGGATCCCCCTGGGTCCTACAGGGCCGGCGGGACCGTCTTTCGATATAACCGTCCTCCCAGGGAGGAGGGCAAAGGGGAGAGTCTGTCGGCTGAAGGCCCCACCACCCAGCCTGTGGATGTCTAT
Seq C2 exon
ATGATCTTTCAGGAGGAAAACCCAGGCGTTTTTTATCAGTATGTCATCTCTTCACCTCCTCCAATCCTTGAGAACCCCACCCCAGAGCCCCCTGTCCCCCAGCTTCAGCCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000143382_CASSETTE4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.596 C2=0.447
Domain overlap (PFAM):
C1:
PF059869=ADAM_spacer1=PU(35.3=59.4)
A:
PF059869=ADAM_spacer1=FE(49.1=100)
C2:
PF059869=ADAM_spacer1=PD(13.8=42.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGATGGCTGTGGAGTCTGTG
R:
GGTGGGGTTCTCAAGGATTGG
Band lengths:
246-419
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)