MmuEX0003906 @ mm9
Exon Skipping
Gene
ENSMUSG00000015850 | Adamtsl4
Description
ADAMTS-like 4 [Source:MGI Symbol;Acc:MGI:2389008]
Coordinates
chr3:95484947-95485779:-
Coord C1 exon
chr3:95485575-95485779
Coord A exon
chr3:95485183-95485355
Coord C2 exon
chr3:95484947-95485058
Length
173 bp
Sequences
Splice sites
3' ss Seq
CTCAGACATCTGTCTTTCAGCAC
3' ss Score
6.46
5' ss Seq
TATGTGAGC
5' ss Score
2.97
Exon sequences
Seq C1 exon
AGCCCTGGCTGTGATGGGGTCCTTGGCTCTGGCAGGCGTCCGGATGGCTGCGGAGTCTGCGGGGGTGATGGTTCTACCTGCCGCCTGGTTTCGGGAAATCTCACTGACCGAGGGGGCCCCTTGGGCTATCAGAAGATCCTGTGGATCCCTGCCGGGGCCTCCCACCTTCACATTTCCCAGTTGCGACCCAGTTCCAATTACCTCG
Seq A exon
CACTCCGAGGGCCTGGGGGCCGCTCCATTATCAATGGGAACTGGGCTGTGGATCCTCCAGGGTCCTATACAGCCATTGGGACTGTCTTCCAGTATAACCGTCCTCCACGGGAAGAAGGCAAGGGGGAGAGTCTGTCAGCAGAAGGCCCTACCACTCAGCCTGTGGACGTCTAT
Seq C2 exon
ATGATCTTTCAAGAGGACAACCCAGGTGTTTTTTATCAGTATGTCATCTCTTCCCCTCCTGCAGTCCTAGAGAGTCCTTCCACAAAGCCTCCAGCCCTTCAGCCTCAGCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015850_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.534 C2=0.368
Domain overlap (PFAM):
C1:
PF059869=ADAM_spacer1=PU(35.3=59.4)
A:
PF059869=ADAM_spacer1=FE(49.1=100)
C2:
PF059869=ADAM_spacer1=PD(13.8=42.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATGGGGTCCTTGGCTCTG
R:
CTGCAGGAGGGGAAGAGATGA
Band lengths:
258-431
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: