RnoEX0006937 @ rn6
Exon Skipping
Gene
ENSRNOG00000049385 | Adamtsl4
Description
ADAMTS-like 4 [Source:RGD Symbol;Acc:1561012]
Coordinates
chr2:197808066-197808868:-
Coord C1 exon
chr2:197808664-197808868
Coord A exon
chr2:197808314-197808486
Coord C2 exon
chr2:197808066-197808168
Length
173 bp
Sequences
Splice sites
3' ss Seq
CTCAGATTTCTGTCTTTCAGCAC
3' ss Score
7.89
5' ss Seq
TATGTGAGC
5' ss Score
2.97
Exon sequences
Seq C1 exon
AGCCCCGGCTGTGATGGGATCCTTGGCTCTGGCAGGCGTCCGGATGGCTGTGGAGTCTGTGGGGGTGACGGCTCTACCTGCCGTCTCGTTTCGGGGAATCTCACTGACCGAGGGGGCCCCTTGGGCTATCAGAAGATCCTGTGGATTCCTGCGGGAGCCTCCCATCTTCGCATTTCCCAGTTCCGACCCAGTTCCAATTACCTTG
Seq A exon
CACTTCGAGGGCCTGGTGGCCGCTCCATTATCAATGGGAACTGGGCTGTAGATCCTCCAGGATCCTACGCGGCCGTCGGGACCGTCTTCCAGTATAACCGTCCTCCTCGGGAGGAGGGCAAGGGGGAGACTCTGTCAGCAGAAGGCCCTACCACCCAGCCTGTGGATGTCTAT
Seq C2 exon
ATGATCTTTCAAGAGGACAACCCAGGTGTCTTCTATCAGTATGTCACCTCTGCAGCCCCAGAGAGCCCTTCCACAATGCCTCCAGCCCTTCAGCTTCAGCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000049385_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.483 C2=0.457
Domain overlap (PFAM):
C1:
PF059869=ADAM_spacer1=PU(35.3=59.4)
A:
PF059869=ADAM_spacer1=FE(49.1=100)
C2:
PF059869=ADAM_spacer1=PD(13.8=45.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGATGGGATCCTTGGCTCT
R:
GGCTGCAGAGGTGACATACTG
Band lengths:
253-426
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]