GgaEX6007648 @ galGal4
Exon Skipping
Gene
ENSGALG00000004087 | THSD4
Description
thrombospondin, type I, domain containing 4 [Source:HGNC Symbol;Acc:HGNC:25835]
Coordinates
chr10:6029903-6064631:+
Coord C1 exon
chr10:6029903-6030107
Coord A exon
chr10:6059491-6059666
Coord C2 exon
chr10:6064535-6064631
Length
176 bp
Sequences
Splice sites
3' ss Seq
TCTCTCCCTGTCCTGTACAGCCT
3' ss Score
9.32
5' ss Seq
TATGTAAGT
5' ss Score
6.69
Exon sequences
Seq C1 exon
AGCATTGGCTGTGACGACTATCTGGGTTCAGACAAGGTGATTGACAAGTGTGGAATATGTGGAGGGGACAACACTGCTTGCAAGGTTGTTTCTGGAGTTTTCAAACACACCCTAACAAATCTCGGCTATCACAAGATAGTGGAAATTCCTGAAGGAGCTACTAAAATTAACATTACTGAGATGTCAAAGAGCAACAACTATTTGG
Seq A exon
CCTTGCGGAGTCGATCAGGGCGGTCCATCATCAATGGAAACTGGGCAATTGATCGGCCTGGAAGATATGAAGGTGGTGGGACAATGTTCACTTACAAACGCCCAAATGAAATCTCCAGCACTGCAGGAGAGTCCTTTTTAGCGGATGGTCCAACAAATGAAGTCCTTGATGTCTAT
Seq C2 exon
ATGATACATCAGCAGCCTAACCCAGGTATACATTATGAGTATATCATTCCAGGAGACAATGTCATCAGTCCTCAGTTGCTTGCTCACAGGAGGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004087-'19-24,'19-23,21-24=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.305 C2=0.394
Domain overlap (PFAM):
C1:
PF059869=ADAM_spacer1=PU(35.0=59.4)
A:
PF059869=ADAM_spacer1=FE(49.6=100)
C2:
PF059869=ADAM_spacer1=PD(13.7=48.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGGAATATGTGGAGGGGACA
R:
TGTGAGCAAGCAACTGAGGAC
Band lengths:
245-421
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]