RnoEX6036084 @ rn6
Exon Skipping
Gene
ENSRNOG00000051221 | AABR07070310.1
Description
NA
Coordinates
chr8:64852251-64913684:-
Coord C1 exon
chr8:64913477-64913684
Coord A exon
chr8:64855071-64855246
Coord C2 exon
chr8:64852251-64852347
Length
176 bp
Sequences
Splice sites
3' ss Seq
CGGTTCATTTGTCTCCACAGCCT
3' ss Score
9.36
5' ss Seq
TATGTGAGT
5' ss Score
5.56
Exon sequences
Seq C1 exon
CAGAGCATCGGCTGTGATGACTTCCTGGGATCTGACAAAGTCGTGGACAAGTGTGGGGTGTGCGGCGGTGATAACACGGGCTGCCAGGTGGTGTCAGGCGTGTTTAAGCATGCCCTCACCAGCCTGGGCTACCACCGGGTTGTAGAGATTCCCCAAGGAGCCACAAAAATTAACATTACGGAAATGCACAAGAGCAACAACTACTTGG
Seq A exon
CCTTGCGAAGTCGCTCTGGCCGCTCCATCATCAATGGGAACTGGGCAATCGATCGCCCCGGGAAGTACGAGGGCGGAGGGACAATGTTCACCTACAAGCGACCGAACGAGATCTCCAGCACTGCCGGGGAGTCCTTTTTGGCTGAAGGTCCCACTAATGAGATCCTGGATGTCTAT
Seq C2 exon
ATGATACACCAGCAGCCCAACCCAGGAGTCCACTATGAGTACGTGATCATGGGGAATAATGCCATCAGTCCACAGGTGCCACCACACAGGAGACCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000051221-'4-8,'4-6,6-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGTCGTGGACAAGTGTGGG
R:
CACCTGTGGACTGATGGCATT
Band lengths:
250-426
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]