DreEX0011328 @ danRer10
Exon Skipping
Gene
ENSDARG00000055439 | adamtsl7
Description
ADAMTS-like 7 [Source:ZFIN;Acc:ZDB-GENE-070816-2]
Coordinates
chr1:20898765-20900914:-
Coord C1 exon
chr1:20900731-20900914
Coord A exon
chr1:20899607-20899782
Coord C2 exon
chr1:20898765-20898870
Length
176 bp
Sequences
Splice sites
3' ss Seq
TCCCTCTCTTTTTCTTCAAGCTC
3' ss Score
8.81
5' ss Seq
TTTGTAAGG
5' ss Score
3.89
Exon sequences
Seq C1 exon
GGCTGTGAGGGTTTCCAGGTGGATGTGTGTGGTGTGTGTGCTGGAGACGGGAGCTCGTGTGAACTGTTCAATGGGACAATCTTTCTCTCTGTGCTCTCGGTTAGATACCACAAGATCCTGGATATCCCCTCTGGAGCTCTGCGAATAAAAATACAGGAAACACACAAGACCAGGAACTATTTGG
Seq A exon
CTCTCAGCATGGCAACTGGTGAATCGGTGATAAATGGTGACTGGGTGATCGACAGGCCAGGACAGTTTTACGCCGCAGGCACTCAGTTCACATACAAGCGGCCCAATGAGATACGCAGCAGAGCAGGAGAATCCATCACTGCACCTGGACCCACCAATCAGGAGCTGAATCTCTTT
Seq C2 exon
GTGATTTACCAACAGCCTGATGCAGCAGTGTATTATGAATATATTCTACCCAAACACACTAACACTCATTCAGATGCATATTCTTACTCTAGCGTACTTCCTCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000055439-'1-2,'1-1,2-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.133 C2=0.000
Domain overlap (PFAM):
C1:
PF059869=ADAM_spacer1=PU(33.0=61.3)
A:
PF059869=ADAM_spacer1=FE(51.3=100)
C2:
PF059869=ADAM_spacer1=PD(14.8=47.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGGGTTTCCAGGTGGATGT
R:
TGAGTGTTAGTGTGTTTGGGT
Band lengths:
247-423
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]