MmuEX6066473 @ mm10
Exon Skipping
Gene
ENSMUSG00000032289 | Thsd4
Description
thrombospondin, type I, domain containing 4 [Source:MGI Symbol;Acc:MGI:2672033]
Coordinates
chr9:59999941-60057055:-
Coord C1 exon
chr9:60056851-60057055
Coord A exon
chr9:60002851-60003026
Coord C2 exon
chr9:59999941-60000037
Length
176 bp
Sequences
Splice sites
3' ss Seq
TGGTTCTCTTGTCTCCACAGCCT
3' ss Score
10.23
5' ss Seq
TATGTGAGT
5' ss Score
5.56
Exon sequences
Seq C1 exon
AGCATTGGCTGTGACGACTTCCTGGGATCTGACAAAGTCTTGGACAAGTGCGGGGTGTGTGGAGGTGATAACACGGGCTGCCAGGTGGTGTCGGGAGTGTTCAAGCACGCCCTCACCAGCCTGGGCTACCACCGGGTTGTAGAGATTCCCCAAGGAGCTACGAAAATTAACATTACAGAGATGCACAAGAGCAACAACTACTTAG
Seq A exon
CCTTGCGAAGTCGCTCTGGCCGCTCCATCATCAATGGGAACTGGGCAATCGATCGCCCGGGGAAGTACGAGGGCGGAGGGACAATGTTCACCTACAAACGACCGAACGAGGTCTCCAGCACTGCGGGGGAGTCCTTTCTGGCTGAGGGTCCCACTAATGAGATCCTGGATGTCTAT
Seq C2 exon
ATGATACACCAGCAGCCCAACCCAGGAGTCCACTATGAGTACGTGATCATGAGGAATAATGCCATCAGCCCACAGGTGCCACCACACAGGAGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032289-'27-34,'27-32,28-34=AN
Average complexity
A_C3
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.390 C2=0.818
Domain overlap (PFAM):
C1:
PF059869=ADAM_spacer1=PU(35.0=59.4)
A:
PF059869=ADAM_spacer1=FE(49.6=100)
C2:
PF059869=ADAM_spacer1=PD(13.7=48.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCCGTGTAAGGAGTTGTCT
R:
CTGGTCTCCTGTGTGGTGGC
Band lengths:
194-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types