BtaEX6051310 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011644 | THSD4
Description
thrombospondin type-1 domain-containing protein 4 precursor [Source:RefSeq peptide;Acc:NP_001071498]
Coordinates
chr10:18496286-18573982:+
Coord C1 exon
chr10:18496286-18496493
Coord A exon
chr10:18571335-18571510
Coord C2 exon
chr10:18573886-18573982
Length
176 bp
Sequences
Splice sites
3' ss Seq
TGTCTCATTTTTCTCAACAGCCT
3' ss Score
9.83
5' ss Seq
TATGTGAGT
5' ss Score
5.56
Exon sequences
Seq C1 exon
CAGAGCATTGGCTGTGATGACTACCTAGGCTCCGACAAAGTTGTGGACAAATGCGGGGTGTGCGGAGGCGATAACACAGGCTGCCAGGTTGTGTCGGGTGTGTTTAAGCATGCCCTCACCAGCCTGGGCTACCACCGAGTTGTGGAGATTCCCCAAGGAGCCACAAAAATCAACATCACCGAGATGCACAAGAGCAACAACTATTTGG
Seq A exon
CCTTGCGAAGTCGTTCTGGCCGCTCCATCATCAATGGGAACTGGGCAATTGACCGGCCTGGAAAATACGAGGGCGGAGGGACCATGTTCACATACAAGCGTCCAAATGAGATTTCGAGCACTGCTGGAGAGTCCTTTTTGGCCGAAGGTCCCACTAATGAGATCTTGGATGTTTAT
Seq C2 exon
ATGATACACCAGCAGCCTAACCCAGGAGTCCATTATGAGTACGTGATCATGGGGAACAACGCCATCAGCCCACAGGTGCCACCTCACAGGAGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011644-'1-4,'1-3,2-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.335 C2=0.569
Domain overlap (PFAM):
C1:
PF059869=ADAM_spacer1=PU(35.0=58.6)
A:
PF059869=ADAM_spacer1=FE(49.6=100)
C2:
PF059869=ADAM_spacer1=PD(13.7=50.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCCGACAAAGTTGTGGACA
R:
ATGGCGTTGTTCCCCATGATC
Band lengths:
245-421
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]