HsaEX0003066 @ hg19
Exon Skipping
Gene
ENSG00000204305 | AGER
Description
advanced glycosylation end product-specific receptor [Source:HGNC Symbol;Acc:320]
Coordinates
chr6:32149301-32150708:-
Coord C1 exon
chr6:32150345-32150708
Coord A exon
chr6:32150024-32150165
Coord C2 exon
chr6:32149301-32149409
Length
142 bp
Sequences
Splice sites
3' ss Seq
CTCTCCCCTTCCCCCACCAGGGT
3' ss Score
11.16
5' ss Seq
TCGGTGAGA
5' ss Score
8.51
Exon sequences
Seq C1 exon
GATCCCCGTCCCACCTTCTCCTGTAGCTTCAGCCCAGGCCTTCCCCGACACCGGGCCTTGCGCACAGCCCCCATCCAGCCCCGTGTCTGGGGTGAGCATAGGTGGGGAGGGCCCCAAGCTCACGTGAGCACGTTCTGGAAGTCTGACCCTTAGGGAAAGAGGGAGTCAAGCCCATGGCCACTGGGATCACTCACAAGTGTAACTCTCCACCTCAAAACCCTTCCAACTCCCAGAGCCTGTGCCTCTGGAGGAGGTCCAATTGGTGGTGGAGCCAGAAGGTGGAGCAGTAGCTCCTGGTGGAACCGTAACCCTGACCTGTGAAGTCCCTGCCCAGCCCTCTCCTCAAATCCACTGGATGAAGGAT
Seq A exon
GGTGTGCCCTTGCCCCTTCCCCCCAGCCCTGTGCTGATCCTCCCTGAGATAGGGCCTCAGGACCAGGGAACCTACAGCTGTGTGGCCACCCATTCCAGCCACGGGCCCCAGGAAAGCCGTGCTGTCAGCATCAGCATCATCG
Seq C2 exon
AACCAGGCGAGGAGGGGCCAACTGCAGGTGAGGGGTTTGATAAAGTCAGGGAAGCAGAAGATAGCCCCCAACACATGTGACTGGGGGGATGGTCAACAAGAAAGGAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000204305-'10-12,'10-9,12-12
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show PDB structure
Features
Disorder rate (Iupred):
C1=0.739 A=0.740 C2=0.984
Domain overlap (PFAM):
C1:
PF138951=Ig_2=PU(44.0=84.1)
A:
PF138951=Ig_2=PD(53.6=93.8),PF066977=DUF1191=PU(30.1=64.6)
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCACTGGGATCACTCACAAG
R:
GGGGCTATCTTCTGCTTCCCT
Band lengths:
256-398
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)