MmuEX6077129 @ mm10
Exon Skipping
Gene
ENSMUSG00000015452 | Ager
Description
advanced glycosylation end product-specific receptor [Source:MGI Symbol;Acc:MGI:893592]
Coordinates
chr17:34599996-34600377:+
Coord C1 exon
chr17:34599996-34600043
Coord A exon
chr17:34600124-34600137
Coord C2 exon
chr17:34600351-34600377
Length
14 bp
Sequences
Splice sites
3' ss Seq
CAGGAAAGCCCTCCTGTCAGCAT
3' ss Score
-2.73
5' ss Seq
CAGGTAACC
5' ss Score
8.66
Exon sequences
Seq C1 exon
GGTGCACCCTTGCCCCTGGCTCCCAGCCCTGTGCTGCTCCTCCCTGAG
Seq A exon
CATCAGGGTCACAG
Seq C2 exon
AAACCGGCGATGAGGGGCCAGCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015452-MICROEX1
Average complexity
MIC-S
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.771 A=0.771 C2=1.000
Domain overlap (PFAM):
C1:
PF138951=Ig_2=PD(54.2=93.8),PF0240410=SCF=PU(16.3=31.2)
A:
PF138951=Ig_2=PD(54.2=93.8),PF0240410=SCF=PU(16.3=31.2)
C2:
PF0240410=SCF=FE(9.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types