MmuEX6077129 @ mm9
Exon Skipping
Gene
ENSMUSG00000015452 | Ager
Description
advanced glycosylation end product-specific receptor [Source:MGI Symbol;Acc:MGI:893592]
Coordinates
chr17:34736291-34737322:+
Coord C1 exon
chr17:34736291-34736421
Coord A exon
chr17:34736941-34737082
Coord C2 exon
chr17:34737296-34737322
Length
142 bp
Sequences
Splice sites
3' ss Seq
TCTGTCTTCTTTCCCACCAGGGT
3' ss Score
11.99
5' ss Seq
CAGGTAACC
5' ss Score
8.66
Exon sequences
Seq C1 exon
AGCCTGGGCCTCCAGAGGGCATTCAGCTGTTGGTTGAGCCTGAAGGTGGAATAGTCGCTCCTGGTGGGACTGTGACCTTGACCTGTGCCATCTCTGCCCAGCCCCCTCCTCAGGTCCACTGGATAAAGGAT
Seq A exon
GGTGCACCCTTGCCCCTGGCTCCCAGCCCTGTGCTGCTCCTCCCTGAGGTGGGGCACGAGGATGAGGGCACCTATAGCTGCGTGGCCACCCACCCTAGCCACGGACCTCAGGAAAGCCCTCCTGTCAGCATCAGGGTCACAG
Seq C2 exon
AAACCGGCGATGAGGGGCCAGCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015452-'9-8,'9-6,10-8=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.614 A=0.792 C2=0.815
Domain overlap (PFAM):
C1:
PF138951=Ig_2=PU(43.4=81.8)
A:
PF138951=Ig_2=PD(54.2=93.8),PF066977=DUF1191=PU(28.6=66.7),PF0240410=SCF=PU(16.3=31.2)
C2:
PF066977=DUF1191=FE(8.0=100),PF0240410=SCF=FE(9.8=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAGGGCATTCAGCTGTTGG
R:
CTTCAGCTGGCCCCTCATC
Band lengths:
146-288
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: